Browse Element(s) Details


Os.46631.1.S1_x_at

Description gb:NM_197613.1
DB_XREF= gi:37536585
TID=Os.46631.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46631 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cellulase (OSJNBa0001O14.5), mRNA.
PROD=putative cellulase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3984010/11Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g297503/11Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g018001/11Glycosyl hydrolases family 16 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39780Os.3095.1.S1_at11/1110+20963398..20967794protein phosphatase 2C homolog, putative, expressed
LOC_Os10g39790Os.46516.1.S1_at11/1110+20968971..20972019CorA-like Mg2+ transporter protein, expressed
LOC_Os10g39800Os.46632.1.S1_at11/1110+20972324..20975976hypothetical protein
LOC_Os10g39810Os.3082.1.S1_at10/1110+20978768..20981722Sterol desaturase family protein, expressed
LOC_Os10g39820Os.3085.1.S1_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.47632.1.S1_s_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.15864.1.S1_s_at1/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39860Os.32501.1.S1_a_at11/1110+20998536..21000958rhodanese, putative, expressed
LOC_Os10g39870Os.46896.1.S1_at10/1110+21001807..21002970cytochrome c biogenesis protein CcmE family, putative, expressed
LOC_Os10g39880Os.46404.1.S1_x_at7/1110+21004969..21006142Photosystem Q, putative
LOC_Os10g39890OsAffx.20155.1.S1_at10/1110+21008624..21009742Pollen proteins Ole e I family protein
LOC_Os10g39900Os.22919.1.S1_at11/1110+21011214..21018389expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0042546biological_processcell wall biosynthesis
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46631.1.S1_x_at--397--4031Chr10:20991166..20991190 (25 bp)
CGTACACGCTGCAGACGAACGTCTA
LOC_Os10g39840
Os.46631.1.S1_x_at--941--1831Chr10:20991171..20991195 (25 bp)
ACGCTGCAGACGAACGTCTACGTGC
LOC_Os10g39840
Os.46631.1.S1_x_at--22--9412Chr10:20991217..20991241 (25 bp)
TCGTCGGCCGCGAGATGCGCTTCCA
LOC_Os10g39840
Os.46631.1.S1_x_at--1105--4612Chr10:20991226..20991250 (25 bp)
GCGAGATGCGCTTCCACCTCTGGTT
LOC_Os10g39840
Os.46631.1.S1_x_at--466--8511Chr10:20991288..20991309 (22 bp)
TGGAACCCCGACCAAATCTTGTTCT
LOC_Os10g39840
Os.46631.1.S1_x_at--286--1711NONE
ACCAAATCTTGTTCTTGGTGGACGA
NONE
Os.46631.1.S1_x_at--992--1852Chr10:20991962..20991986 (25 bp)
ACGACGTGCCGATCAGGAGGTACGA
LOC_Os10g39840
Os.46631.1.S1_x_at--490--6031Chr10:20992018..20992042 (25 bp)
GAGATGTGGGCGTACGGATCCATCT
LOC_Os10g39840
Os.46631.1.S1_x_at--1128--9911Chr10:20992030..20992054 (25 bp)
TACGGATCCATCTGGGACGCCTCCG
LOC_Os10g39840
Os.46631.1.S1_x_at--978--1631Chr10:20992244..20992268 (25 bp)
AGCGCAACGCCATGGTCTACTACTA
LOC_Os10g39840
Os.46631.1.S1_x_at--312--4432Chr10:20992252..20992276 (25 bp)
GCCATGGTCTACTACTACTGCCAGG
LOC_Os10g39840
Target Sequence 
CGTACACGCTGCAGACGAACGTCTACGTGCGCGGCTCCGGCGACGGCAACATCGTCGGCCGCGAGATGCGCTTCCACCTC
TGGTTCGACCCCACCGCCGGCTTCCACCACTACGCCATCCTCTGGAACCCCGACCAAATCTTGTTCTTGGTGGACGACGT
GCCGATCAGGAGGTACGAGAAGAAGGTGGAGGGGACGTTCCCGGAGCGGGAGATGTGGGCGTACGGATCCATCTGGGACG
CCTCCGACTGGGCCACCGACGGCGGCCGCTACCGCGCCGACTACCGCTACCAGCCCTTCGTCTCCCGCTTCGCCGACCTC
AAGGTCGGCGGCTGCGCCACCGCCGCGCCGCCGGCGTGCAGCCCCGTGCCGGCGTCGTCCGGCGGCGGCTCCGCGGCGCT
CAGCCCGCAGCAGGAGGCCGCCATGGCGTGGGCGCAGCGCAACGCCATGGTCTACTACTACTGCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46631.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis