Browse Element(s) Details


Os.3082.1.S1_at

Description gb:AK061779.1
DB_XREF= gi:32971797
TID=Os.3082.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative C-4 sterol methyl oxidase (OSJNBa0001O14.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D10, full insert sequence.
FL= gb:AK061779.1 gb:AK098884.1 gb:AK121804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3981010/11Sterol desaturase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39780Os.3095.1.S1_at11/1110+20963398..20967794protein phosphatase 2C homolog, putative, expressed
LOC_Os10g39790Os.46516.1.S1_at11/1110+20968971..20972019CorA-like Mg2+ transporter protein, expressed
LOC_Os10g39800Os.46632.1.S1_at11/1110+20972324..20975976hypothetical protein
LOC_Os10g39810Os.3082.1.S1_at10/1110+20978768..20981722Sterol desaturase family protein, expressed
LOC_Os10g39820Os.3085.1.S1_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.47632.1.S1_s_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.15864.1.S1_s_at1/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39860Os.32501.1.S1_a_at11/1110+20998536..21000958rhodanese, putative, expressed
LOC_Os10g39870Os.46896.1.S1_at10/1110+21001807..21002970cytochrome c biogenesis protein CcmE family, putative, expressed
LOC_Os10g39880Os.46404.1.S1_x_at7/1110+21004969..21006142Photosystem Q, putative

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0016020cellular_componentmembrane
GO:0000254molecular_functionC-4 methylsterol oxidase activity
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3082.1.S1_at--653--3571NONE
CATAGAGACACACAGCGGCTTTGAT
NONE
Os.3082.1.S1_at--289--8811Chr10:20980930..20980954 (25 bp)
TGATTTCCCGTTCAACCTGACAAAG
LOC_Os10g39810
Os.3082.1.S1_at--275--8011Chr10:20980970..20980994 (25 bp)
GGAGGCGCAGAATACCATGATTATC
LOC_Os10g39810
Os.3082.1.S1_at--199--431Chr10:20980992..20981016 (25 bp)
ATCATCACTATGTTGGACGCCAGAG
LOC_Os10g39810
Os.3082.1.S1_at--994--5191Chr10:20981022..20981046 (25 bp)
GCAATTTCGCTTCTGTTTTCACGTA
LOC_Os10g39810
Os.3082.1.S1_at--370--2451Chr10:20981459..20981483 (25 bp)
AAAATCTGGAATGCCTCCCTGGTCA
LOC_Os10g39810
Os.3082.1.S1_at--637--9311Chr10:20981474..20981498 (25 bp)
TCCCTGGTCATTTTGTTCGTTACGG
LOC_Os10g39810
Os.3082.1.S1_at--75--8771Chr10:20981531..20981555 (25 bp)
TGTAGTAGTGTCGTGCTGCTGTGCC
LOC_Os10g39810
Os.3082.1.S1_at--376--7371Chr10:20981572..20981596 (25 bp)
GTGACTTGTGAGCATCCATGGAACT
LOC_Os10g39810
Os.3082.1.S1_at--816--8511Chr10:20981590..20981614 (25 bp)
TGGAACTTGTTACGCTGACCAATAA
LOC_Os10g39810
Os.3082.1.S1_at--647--6931Chr10:20981628..20981652 (25 bp)
GTAGTCTTTATGTGGTTTGCGCTCA
LOC_Os10g39810
Target Sequence 
CATAGAGACACACAGCGGCTTTGATTTCCCGTTCAACCTGACAAAGTATATTCCATTCTATGGAGGCGCAGAATACCATG
ATTATCATCACTATGTTGGACGCCAGAGTCAGAGCAATTTCGCTTCTGTTTTCACGTATTGTGATTATCTATATGGAACC
GACAAAGGTTACAGATACCATAAGGCGTACCAAGCAAAGATGAAGGCTCTGGGGCAAACGGAAGGCGAGAAAGCAGATAG
CAATGGATTGAGCTACGCGAAGTTGGATTAAACTGTCCTATATATAGCCAAAATCTGGAATGCCTCCCTGGTCATTTTGT
TCGTTACGGCTTGTGTAGTGTTTTGATTTTGTTTCGATTTCTGTAGTAGTGTCGTGCTGCTGTGCCTTTTGTTTTTGTGG
CTGTGACTTGTGAGCATCCATGGAACTTGTTACGCTGACCAATAACATTGTGACTCGGGTAGTCTTTATGTGGTTTGCGC
TCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis