Browse Element(s) Details


OsAffx.16482.1.S1_x_at

Description tigr:9635.m02900
TID=OsAffx.16482.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 16, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2975011/11Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g398401/11Glycosyl hydrolases family 16 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29720OsAffx.28663.1.S1_at11/117+17469440..17470378hypothetical protein
LOC_Os07g29730NANA7+17473093..17477552transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g29740Os.47463.1.S1_x_at2/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29740Os.14491.2.S1_x_at1/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29750OsAffx.16482.1.S1_x_at11/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750OsAffx.16482.1.S1_at11/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750Os.46631.1.S1_x_at3/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29760Os.20514.1.S1_x_at11/117+17494808..17496308Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29760OsAffx.22518.1.S1_x_at1/117+17494808..17496308Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29770Os.19330.3.S1_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29770Os.19330.1.S1_x_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29780Os.36953.2.S1_x_at11/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29780Os.36953.1.S1_at10/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29794Os.37000.2.S1_x_at11/117+17512388..17519010expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0042546biological_processcell wall biosynthesis
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16482.1.S1_x_at--213--4451Chr07:17490026..17490146 (25 bp)
GCCTTCTACCTGTCGAACAACGAGG
LOC_Os07g29750
OsAffx.16482.1.S1_x_at--825--8711Chr07:17490132..17490156 (25 bp)
TGTCGAACAACGAGGCGCACCCGGG
LOC_Os07g29750
OsAffx.16482.1.S1_x_at--1127--4091Chr07:17490172..17490196 (25 bp)
CGACATGGAGTTCCTGGGCACCATC
LOC_Os07g29750
OsAffx.16482.1.S1_x_at--460--5811Chr07:17490338..17490442 (25 bp)
GACGCCATCACGTTTTTCGTGGACG
LOC_Os07g29750
OsAffx.16482.1.S1_x_at--342--9631Chr07:17490429..17490449 (21 bp)
TCACGTTTTTCGTGGACGACGTGCC
LOC_Os07g29750
OsAffx.16482.1.S1_x_at--993--1852Chr10:20991962..20991986 (25 bp)
ACGACGTGCCGATCAGGAGGTACGA
LOC_Os10g39840
OsAffx.16482.1.S1_x_at--129--5351Chr07:17490468..17490492 (25 bp)
GAAGAGCGAGCTGACGTTCCCGGAC
LOC_Os07g29750
OsAffx.16482.1.S1_x_at--604--8911Chr07:17490479..17490503 (25 bp)
TGACGTTCCCGGACCGGCCGATGTG
LOC_Os07g29750
OsAffx.16482.1.S1_x_at--274--1171Chr07:17490692..17490716 (25 bp)
AGTACGCCGCCATGCGGTGGGCCCA
LOC_Os07g29750
OsAffx.16482.1.S1_x_at--240--7571Chr07:17490710..17490734 (25 bp)
GGGCCCAGCAGAGCCACATGGTGTA
LOC_Os07g29750
OsAffx.16482.1.S1_x_at--156--8751Chr07:17490731..17490755 (25 bp)
TGTACTACTACTGCCAGGACTACCG
LOC_Os07g29750
Target Sequence 
GCCTTCTACCTGTCGAACAACGAGGCGCACCCGGGGTTCCACGACGAGATCGACATGGAGTTCCTGGGCACCATCCCCGG
CGAGCCCTACACCCTCCAGACCAACGTCTACGTCCGCGGCTCCGGCGACGGCCGCATCGTCGGCCGCGAGATGCGCTTCC
ACCTCTGGTTCGACCCCACCGCCGACTTCCACCACTACGCCATCCTCTGGAACCCCGACGCCATCACGTTTTTCGTGGAC
GACGTGCCGATCAGGAGGTACGAGAGGAAGAGCGAGCTGACGTTCCCGGACCGGCCGATGTGGGTGTACGGCTCCATCTG
GGACGCGTCGGACTGGGCCACCGACGACGGCCGCCACCGCGCCGACTACCGCTACCAGCCGTTCGTCGCGCGCTTCGACC
GCTTCACCGTCGCCGGGTGCGCCCCGTCGGCCCCCGCCTCGTGCCGCCCCGTCCCGGCCTCCCCCGCCGGCGCCGGCCTC
ACGCCGCGCCAGTACGCCGCCATGCGGTGGGCCCAGCAGAGCCACATGGTGTACTACTACTGCCAGGACTACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16482.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis