Browse Element(s) Details


Os.19330.3.S1_at

Description gb:AK101192.1
DB_XREF= gi:32986401
TID=Os.19330.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030H11, full insert sequence.
FL= gb:AK101192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2977011/11MYND finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29730NANA7+17473093..17477552transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g29740Os.47463.1.S1_x_at2/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29740Os.14491.2.S1_x_at1/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29750OsAffx.16482.1.S1_x_at11/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750OsAffx.16482.1.S1_at11/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750Os.46631.1.S1_x_at3/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29760Os.20514.1.S1_x_at11/117+17494808..17496308Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29760OsAffx.22518.1.S1_x_at1/117+17494808..17496308Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29770Os.19330.3.S1_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29770Os.19330.1.S1_x_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29780Os.36953.2.S1_x_at11/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29780Os.36953.1.S1_at10/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29794Os.37000.2.S1_x_at11/117+17512388..17519010expressed protein
LOC_Os07g29810OsAffx.28664.1.S1_at11/117+17522393..17526402NB-ARC domain containing protein
LOC_Os07g29820Os.26923.1.A1_at9/117+17527858..17533293NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19330.3.S1_at--1103--71Chr07:17506962..17506986 (25 bp)
ATTGCCTCTCAAATTGTCTGGTGGA
LOC_Os07g29770
Os.19330.3.S1_at--874--10691Chr07:17506963..17506987 (25 bp)
TTGCCTCTCAAATTGTCTGGTGGAT
LOC_Os07g29770
Os.19330.3.S1_at--11--4471Chr07:17506965..17506989 (25 bp)
GCCTCTCAAATTGTCTGGTGGATTT
LOC_Os07g29770
Os.19330.3.S1_at--507--3171Chr07:17506973..17506997 (25 bp)
AATTGTCTGGTGGATTTGGAATGTA
LOC_Os07g29770
Os.19330.3.S1_at--994--7931Chr07:17506984..17507008 (25 bp)
GGATTTGGAATGTATTTATTGCCTC
LOC_Os07g29770
Os.19330.3.S1_at--860--8191Chr07:17506990..17507014 (25 bp)
GGAATGTATTTATTGCCTCCATTTA
LOC_Os07g29770
Os.19330.3.S1_at--41--6891Chr07:17506995..17507019 (25 bp)
GTATTTATTGCCTCCATTTATTTGG
LOC_Os07g29770
Os.19330.3.S1_at--1096--171Chr07:17506997..17507021 (25 bp)
ATTTATTGCCTCCATTTATTTGGAA
LOC_Os07g29770
Os.19330.3.S1_at--691--71Chr07:17507001..17507025 (25 bp)
ATTGCCTCCATTTATTTGGAAATGC
LOC_Os07g29770
Os.19330.3.S1_at--335--4471Chr07:17507004..17507028 (25 bp)
GCCTCCATTTATTTGGAAATGCATG
LOC_Os07g29770
Os.19330.3.S1_at--964--10851Chr07:17507016..17507040 (25 bp)
TTGGAAATGCATGGTTGTTTTTCAC
LOC_Os07g29770
Target Sequence 
ATTGCCTCTCAAATTGTCTGGTGGATTTGGAATGTATTTATTGCCTCCATTTATTTGGAAATGCATGGTTGTTTTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19330.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis