Browse Element(s) Details


Os.26923.1.A1_at

Description gb:AK121542.1
DB_XREF= gi:37991165
TID=Os.26923.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031P15, full insert sequence.
FL= gb:AK121542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g298209/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29770Os.19330.3.S1_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29770Os.19330.1.S1_x_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29780Os.36953.2.S1_x_at11/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29780Os.36953.1.S1_at10/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29794Os.37000.2.S1_x_at11/117+17512388..17519010expressed protein
LOC_Os07g29810OsAffx.28664.1.S1_at11/117+17522393..17526402NB-ARC domain containing protein
LOC_Os07g29820Os.26923.1.A1_at9/117+17527858..17533293NB-ARC domain containing protein, expressed
LOC_Os07g29830OsAffx.16484.2.S1_at11/117+17537183..17537676hypothetical protein
LOC_Os07g29840Os.41695.5.S1_x_at3/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840OsAffx.29376.1.S1_x_at3/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.3.S1_x_at2/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.4.S1_x_at2/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.2.S1_x_at1/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.51891.1.S1_at1/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29850Os.47463.1.S1_x_at5/117+17554009..17563431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29850Os.14491.2.S1_x_at4/117+17554009..17563431transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26923.1.A1_at--625--5771Chr07:17528413..17528437 (25 bp)
GACGATACTTTCTACTTCTCTTACA
LOC_Os07g29820
Os.26923.1.A1_at--272--7251Chr07:17528354..17528378 (25 bp)
GTCCCTTGCACGATCTTTATACAGT
LOC_Os07g29820
Os.26923.1.A1_at--991--1211Chr07:17528332..17528356 (25 bp)
AGTTCACAGAGCTTCGTTATGCCTT
LOC_Os07g29820
Os.26923.1.A1_at--374--591Chr07:17528314..17528338 (25 bp)
ATGCCTTCTATTACGCCGAGCAATG
LOC_Os07g29820
Os.26923.1.A1_at--116--791Chr07:17528219..17528243 (25 bp)
ATGGGTGAGGACTGAACTTTTCGCA
LOC_Os07g29820
Os.26923.1.A1_at--281--1231Chr07:17528195..17528219 (25 bp)
AGTTCTTCTGTTTGTTGCTGCCCAC
LOC_Os07g29820
Os.26923.1.A1_at--322--2051Chr07:17528172..17528196 (25 bp)
ACTTGTTTTTCTTGTCAACCACGCA
LOC_Os07g29820
Os.26923.1.A1_at--499--1771Chr07:17528045..17528069 (25 bp)
ACCTGTGTTTGTTCTTGTAGCCTAT
LOC_Os07g29820
Os.26923.1.A1_at--822--10051NONE
TAGTTTCACCTAGTCCATATTCCTT
NONE
Os.26923.1.A1_at--548--3131Chr07:17527964..17527988 (25 bp)
CAATTTGTTCTGCACCCATTAGGTT
LOC_Os07g29820
Os.26923.1.A1_at--34--2451NONE
AAAATTGTTTGTGTGCCTCTACCTC
NONE
Target Sequence 
GACGATACTTTCTACTTCTCTTACACCAAAAGTAACAGCAACTTCCATAGAAGCGCAAGGTCCCTTGCACGATCTTTATA
CAGTTCACAGAGCTTCGTTATGCCTTCTATTACGCCGAGCAATGATGTTATTGTACCAGAAGAAAATATAAGGAGAAACA
AGCGAATAGAAATAGGCCGATCCAGGAGTCAGTCATGGGTGAGGACTGAACTTTTCGCAGTTCTTCTGTTTGTTGCTGCC
CACTTGTTTTTCTTGTCAACCACGCATGCTTCTTCACATTGAATTCAGTCAGTTCAGGCAGAGTAAATATTGATGATNNN
NNNGACCTTCTGATGTACCATTTTGTTGGCAAAAAATTCATCTTGTACCTGTGTTTGTTCTTGTAGCCTATTTGAAAAAT
AGTTTCACCTAGTCCATATTCCTTTCTTTTCAATATTTTCTAAGCTCCAATTTGTTCTGCACCCATTAGGTTGGACTGTG
TAATATGTACTTTTGTCAATGGTTACACCACTAGAAAATTGTTTGTGTGCCTCTACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26923.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis