Browse Element(s) Details


OsAffx.28664.1.S1_at

Description tigr:9635.m02906
TID=OsAffx.28664.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2981011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29770Os.19330.3.S1_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29770Os.19330.1.S1_x_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29780Os.36953.2.S1_x_at11/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29780Os.36953.1.S1_at10/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29794Os.37000.2.S1_x_at11/117+17512388..17519010expressed protein
LOC_Os07g29810OsAffx.28664.1.S1_at11/117+17522393..17526402NB-ARC domain containing protein
LOC_Os07g29820Os.26923.1.A1_at9/117+17527858..17533293NB-ARC domain containing protein, expressed
LOC_Os07g29830OsAffx.16484.2.S1_at11/117+17537183..17537676hypothetical protein
LOC_Os07g29840Os.41695.5.S1_x_at3/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840OsAffx.29376.1.S1_x_at3/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.3.S1_x_at2/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.4.S1_x_at2/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.2.S1_x_at1/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.51891.1.S1_at1/117+17538268..17551082SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28664.1.S1_at--303--4231Chr07:17525808..17525832 (25 bp)
CCGCAGATGCCCTAGATTGGATGAT
LOC_Os07g29810
OsAffx.28664.1.S1_at--684--7491Chr07:17525837..17525861 (25 bp)
GTGGTGTTCACTATCTAAGTCATGT
LOC_Os07g29810
OsAffx.28664.1.S1_at--888--9031Chr07:17525913..17525937 (25 bp)
TGCACCAGTGCTTCAGACATTCAAT
LOC_Os07g29810
OsAffx.28664.1.S1_at--204--291Chr07:17525938..17525962 (25 bp)
ATAGTCGGCGTATCAGAATTGCTTG
LOC_Os07g29810
OsAffx.28664.1.S1_at--293--5251Chr07:17526037..17526061 (25 bp)
GAATCACCATTCTTCACTTACACAA
LOC_Os07g29810
OsAffx.28664.1.S1_at--12--3771Chr07:17526066..17526090 (25 bp)
CTCTGGTGATTTCCATGTCGATCAA
LOC_Os07g29810
OsAffx.28664.1.S1_at--66--9051Chr07:17526138..17526162 (25 bp)
TGCAGTCGGAGGCTTGAGCATTCCT
LOC_Os07g29810
OsAffx.28664.1.S1_at--38--1551Chr07:17526154..17526178 (25 bp)
AGCATTCCTGATCACTCTGTTGAGA
LOC_Os07g29810
OsAffx.28664.1.S1_at--979--10111Chr07:17526210..17526234 (25 bp)
TATGAACCGAATATCCACACTGAGG
LOC_Os07g29810
OsAffx.28664.1.S1_at--990--10451Chr07:17526249..17526273 (25 bp)
TTACCTTGTTCCGTACCTTATCATG
LOC_Os07g29810
OsAffx.28664.1.S1_at--1086--6031Chr07:17526328..17526352 (25 bp)
GAGATCTGGCTGGTTCAGACCCTTT
LOC_Os07g29810
Target Sequence 
CCGCAGATGCCCTAGATTGGATGATGTCAGTGGTGTTCACTATCTAAGTCATGTCTGCATCACAGATAAAGAACTGAGGA
AATTACCAGATTGGTTGTCAATACATGCACCAGTGCTTCAGACATTCAATATAGTCGGCGTATCAGAATTGCTTGATAGA
TTACTTCCCAATGGTGAAGACTGGGAAATCATTCGTCAAATTGACAAAGTTTATGCTAACTTACTTGATGAATCACCATT
CTTCACTTACACAAAGAGCTCTGGTGATTTCCATGTCGATCAAAGAATTGGAGAAATAAACAAACCACCTGTTGTGTTAG
GACATGGAACTGCAGTCGGAGGCTTGAGCATTCCTGATCACTCTGTTGAGATAAGCTCTCAAATTGGTGTGTCTAGAGTA
CCTATGAACCGAATATCCACACTGAGGTGGGTCGTAAGGAGTTACCTTGTTCCGTACCTTATCATGGTTATGGTTGTTAT
GCAATTTCTTTCGTATTATCTACACAACAGGTCAACTAGGGAGATCTGGCTGGTTCAGACCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis