Browse Element(s) Details


OsAffx.16484.2.S1_at

Description tigr:9635.m02909
TID=OsAffx.16484.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2983011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29794Os.37000.2.S1_x_at11/117+17512388..17519010expressed protein
LOC_Os07g29810OsAffx.28664.1.S1_at11/117+17522393..17526402NB-ARC domain containing protein
LOC_Os07g29820Os.26923.1.A1_at9/117+17527858..17533293NB-ARC domain containing protein, expressed
LOC_Os07g29830OsAffx.16484.2.S1_at11/117+17537183..17537676hypothetical protein
LOC_Os07g29840Os.41695.5.S1_x_at3/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840OsAffx.29376.1.S1_x_at3/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.3.S1_x_at2/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.4.S1_x_at2/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.41695.2.S1_x_at1/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29840Os.51891.1.S1_at1/117+17538268..17551082SWIM zinc finger family protein
LOC_Os07g29850Os.47463.1.S1_x_at5/117+17554009..17563431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29850Os.14491.2.S1_x_at4/117+17554009..17563431transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16484.2.S1_at--410--3231Chr07:17537557..17537581 (25 bp)
CAAGAGTTATGTAGTGGTTCGCCAT
LOC_Os07g29830
OsAffx.16484.2.S1_at--269--10071Chr07:17537546..17537570 (25 bp)
TAGTGGTTCGCCATGTTGTCCGCAG
LOC_Os07g29830
OsAffx.16484.2.S1_at--762--3511Chr07:17537535..17537559 (25 bp)
CATGTTGTCCGCAGGTCGTCAGAGT
LOC_Os07g29830
OsAffx.16484.2.S1_at--993--5011Chr07:17537525..17537549 (25 bp)
GCAGGTCGTCAGAGTTGTCATCCAT
LOC_Os07g29830
OsAffx.16484.2.S1_at--1103--3411Chr07:17537516..17537540 (25 bp)
CAGAGTTGTCATCCATCCTGAATCT
LOC_Os07g29830
OsAffx.16484.2.S1_at--1075--9471Chr07:17537494..17537518 (25 bp)
TCTGCAGGACGACAAAGGTGACACC
LOC_Os07g29830
OsAffx.16484.2.S1_at--1008--9011Chr07:17537465..17537489 (25 bp)
TGCACAGCGCTGTCCGTACTGAAGA
LOC_Os07g29830
OsAffx.16484.2.S1_at--928--4571Chr07:17537459..17537483 (25 bp)
GCGCTGTCCGTACTGAAGATTTTAT
LOC_Os07g29830
OsAffx.16484.2.S1_at--1144--6531Chr07:17537442..17537466 (25 bp)
GATTTTATTGTTGTCTATGACCTCC
LOC_Os07g29830
OsAffx.16484.2.S1_at--1064--8811Chr07:17537434..17537458 (25 bp)
TGTTGTCTATGACCTCCTTAGGCAT
LOC_Os07g29830
OsAffx.16484.2.S1_at--256--4291Chr07:17537419..17537443 (25 bp)
CCTTAGGCATCCACAGGTACGATTG
LOC_Os07g29830
Target Sequence 
CAAGAGTTATGTAGTGGTTCGCCATGTTGTCCGCAGGTCGTCAGAGTTGTCATCCATCCTGAATCTGCAGGACGACAAAG
GTGACACCGCGCTGCACAGCGCTGTCCGTACTGAAGATTTTATTGTTGTCTATGACCTCCTTAGGCATCCACAGGTACGA
TTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16484.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis