Browse Element(s) Details


Os.47632.1.S1_s_at

Description gb:BX898365
DB_XREF= gi:40487238
DB_XREF=BX898365
CLONE=y623f11p3
TID=Os.47632.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47632 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565112.1 (A.thaliana) DNA-binding protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3982011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39780Os.3095.1.S1_at11/1110+20963398..20967794protein phosphatase 2C homolog, putative, expressed
LOC_Os10g39790Os.46516.1.S1_at11/1110+20968971..20972019CorA-like Mg2+ transporter protein, expressed
LOC_Os10g39800Os.46632.1.S1_at11/1110+20972324..20975976hypothetical protein
LOC_Os10g39810Os.3082.1.S1_at10/1110+20978768..20981722Sterol desaturase family protein, expressed
LOC_Os10g39820Os.3085.1.S1_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.47632.1.S1_s_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.15864.1.S1_s_at1/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39860Os.32501.1.S1_a_at11/1110+20998536..21000958rhodanese, putative, expressed
LOC_Os10g39870Os.46896.1.S1_at10/1110+21001807..21002970cytochrome c biogenesis protein CcmE family, putative, expressed
LOC_Os10g39880Os.46404.1.S1_x_at7/1110+21004969..21006142Photosystem Q, putative
LOC_Os10g39890OsAffx.20155.1.S1_at10/1110+21008624..21009742Pollen proteins Ole e I family protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47632.1.S1_s_at--1082--5951Chr10:20982609..20982633 (25 bp)
GAGAAGGCCTGCAACAACTGTAGGA
LOC_Os10g39820
Os.47632.1.S1_s_at--583--8731Chr10:20982591..20982615 (25 bp)
TGTAGGAAGAGTGGCCATCTTGCTC
LOC_Os10g39820
Os.47632.1.S1_s_at--911--9471Chr10:20982545..20982569 (25 bp)
TCTGCAACCTATGCAACGTGTCAGG
LOC_Os10g39820
Os.47632.1.S1_s_at--638--1911Chr10:20982530..20982554 (25 bp)
ACGTGTCAGGACATTTGGCCCGAGA
LOC_Os10g39820
Os.47632.1.S1_s_at--1145--6011Chr10:20982509..20982533 (25 bp)
GAGAGTGCCCCAAATCTGATGCTAT
LOC_Os10g39820
Os.47632.1.S1_s_at--1011--331Chr10:20982448..20982472 (25 bp)
ATACAGTGATGTGGTCTGCCGTGCT
LOC_Os10g39820
Os.47632.1.S1_s_at--1070--4491Chr10:20982431..20982455 (25 bp)
GCCGTGCTTGCAATCAGGTTGGTCA
LOC_Os10g39820
Os.47632.1.S1_s_at--364--7791Chr10:20982384..20982408 (25 bp)
GGTGCGTTCATGATCTGCCACAACT
LOC_Os10g39820
Os.47632.1.S1_s_at--453--2211Chr10:20982365..20982389 (25 bp)
ACAACTGCGGTGGTCGTGGTCACAT
LOC_Os10g39820
Os.47632.1.S1_s_at--33--7331Chr10:20982270..20982294 (25 bp)
GTGCTCAATCAGATGACTCTTCGTT
LOC_Os10g39820
Os.47632.1.S1_s_at--48--3771Chr10:20982254..20982278 (25 bp)
CTCTTCGTTGGGACCGGCATTATGA
LOC_Os10g39820
Target Sequence 
GAGAAGGCCTGCAACAACTGTAGGAAGAGTGGCCATCTTGCTCNTAACTGCCCTAACGAGCCCGTCTGCAACCTATGCAA
CGTGTCAGGACATTTGGCCCGAGAGTGCCCCAAATCTGATGCTATCAATGAGAGGGGTGGGCCTCCTCCCTTTCGTGGTG
GCGCGCCTCCTCCCTTCCGTGGTGGATACAGTGATGTGGTCTGCCGTGCTTGCAATCAGGTTGGTCATATGAGCCGTGAT
TGCATGGCCGGTGCGTTCATGATCTGCCACAACTGCGGTGGTCGTGGTCACATGGCTNATGAGTGCCCATCTGGGAGGCT
TATGGATCGGTTTCCCCCTCGCCGTTTNTGAGTGATTTTCCAAGTGCTCAATCAGATGACTCTTCGTTGGGACCGGCATT
ATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47632.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis