Browse Element(s) Details


OsAffx.20155.1.S1_at

Description tigr:9638.m03612
TID=OsAffx.20155.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative pollen-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3989010/11Pollen proteins Ole e I family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39820Os.3085.1.S1_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.47632.1.S1_s_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.15864.1.S1_s_at1/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39860Os.32501.1.S1_a_at11/1110+20998536..21000958rhodanese, putative, expressed
LOC_Os10g39870Os.46896.1.S1_at10/1110+21001807..21002970cytochrome c biogenesis protein CcmE family, putative, expressed
LOC_Os10g39880Os.46404.1.S1_x_at7/1110+21004969..21006142Photosystem Q, putative
LOC_Os10g39890OsAffx.20155.1.S1_at10/1110+21008624..21009742Pollen proteins Ole e I family protein
LOC_Os10g39900Os.22919.1.S1_at11/1110+21011214..21018389expressed protein
LOC_Os10g39910Os.26378.1.A1_at11/1110+21020287..21029467expressed protein
LOC_Os10g39920Os.37876.1.S1_at11/1110+21030374..21031359expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20155.1.S1_at--713--611Chr10:21008694..21008718 (25 bp)
ATGCGTGGCACAACTACGGCGCGGC
LOC_Os10g39890
OsAffx.20155.1.S1_at--267--2831Chr10:21008720..21008744 (25 bp)
AAGTTCACGGTGACCGGCTCGGTGC
LOC_Os10g39890
OsAffx.20155.1.S1_at--448--7311Chr10:21008741..21008765 (25 bp)
GTGCTGTGCCAGGACTGCACCAAGA
LOC_Os10g39890
OsAffx.20155.1.S1_at--802--9031Chr10:21008756..21008780 (25 bp)
TGCACCAAGAGCTGGAACGCCTACG
LOC_Os10g39890
OsAffx.20155.1.S1_at--143--3251NONE
CAAGCCCATTCCAGGGAGCATGGTG
NONE
OsAffx.20155.1.S1_at--660--1531Chr10:21009419..21009443 (25 bp)
AGCATGGTGGGCATCACCTGCCTAG
LOC_Os10g39890
OsAffx.20155.1.S1_at--999--371Chr10:21009431..21009455 (25 bp)
ATCACCTGCCTAGACAAGGAGACGG
LOC_Os10g39890
OsAffx.20155.1.S1_at--508--8111Chr10:21009459..21009483 (25 bp)
GGACGGTGTACCACGGGACAGACAA
LOC_Os10g39890
OsAffx.20155.1.S1_at--1082--1911Chr10:21009471..21009495 (25 bp)
ACGGGACAGACAAGACGGATGACAA
LOC_Os10g39890
OsAffx.20155.1.S1_at--58--6771Chr10:21009502..21009526 (25 bp)
GTTCAATATTGAGGTGCCATACACT
LOC_Os10g39890
OsAffx.20155.1.S1_at--941--2031Chr10:21009609..21009633 (25 bp)
ACTTCAATGGCGGTAAGACTGGCGA
LOC_Os10g39890
Target Sequence 
ATGCGTGGCACAACTACGGCGCGGCCAAGTTCACGGTGACCGGCTCGGTGCTGTGCCAGGACTGCACCAAGAGCTGGAAC
GCCTACGCCTACAACGCCAAGCCCATTCCAGGGAGCATGGTGGGCATCACCTGCCTAGACAAGGAGACGGGAAGGACGGT
GTACCACGGGACAGACAAGACGGATGACAAGGGTATGTTCAATATTGAGGTGCCATACACTGTCGGCAGCGCCCACCTCC
ACCCATCAGCATGCCTCGTCCGCCTCGCCTCCTCCGGGGACCACGGTTGCGCCGTCTTCACCAACTTCAATGGCGGTAAG
ACTGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis