Browse Element(s) Details


Os.23245.1.A1_at

Description gb:CA759034
DB_XREF= gi:25803073
DB_XREF=BR060005A20H05.ab1
CLONE=BR060005A20H05.ab1
TID=Os.23245.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0001O14.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3985010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39790Os.46516.1.S1_at11/1110+20968971..20972019CorA-like Mg2+ transporter protein, expressed
LOC_Os10g39800Os.46632.1.S1_at11/1110+20972324..20975976hypothetical protein
LOC_Os10g39810Os.3082.1.S1_at10/1110+20978768..20981722Sterol desaturase family protein, expressed
LOC_Os10g39820Os.3085.1.S1_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.47632.1.S1_s_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.15864.1.S1_s_at1/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39860Os.32501.1.S1_a_at11/1110+20998536..21000958rhodanese, putative, expressed
LOC_Os10g39870Os.46896.1.S1_at10/1110+21001807..21002970cytochrome c biogenesis protein CcmE family, putative, expressed
LOC_Os10g39880Os.46404.1.S1_x_at7/1110+21004969..21006142Photosystem Q, putative
LOC_Os10g39890OsAffx.20155.1.S1_at10/1110+21008624..21009742Pollen proteins Ole e I family protein
LOC_Os10g39900Os.22919.1.S1_at11/1110+21011214..21018389expressed protein
LOC_Os10g39910Os.26378.1.A1_at11/1110+21020287..21029467expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23245.1.A1_at--726--3071Chr10:20993661..20993685 (25 bp)
AATCAGCAACATCTCTTCGCCTATG
LOC_Os10g39850
Os.23245.1.A1_at--706--1991Chr10:20993593..20993617 (25 bp)
ACTCCAGACGTTTGCTGATCTCAGG
LOC_Os10g39850
Os.23245.1.A1_at--850--6151Chr10:20993542..20993566 (25 bp)
GAGGTTTGCAGAGAGCTCGTCGACA
LOC_Os10g39850
Os.23245.1.A1_at--801--2311Chr10:20993513..20993537 (25 bp)
AAAGGTACCTTGGATGCTTGAGCGA
LOC_Os10g39850
Os.23245.1.A1_at--988--1011Chr10:20993463..20993487 (25 bp)
AGGTAGCCCGTAGCAACAACATCAG
LOC_Os10g39850
Os.23245.1.A1_at--233--1231Chr10:20993420..20993444 (25 bp)
AGTTCATTGTCTCTGTCTGTTAGCA
LOC_Os10g39850
Os.23245.1.A1_at--640--10651Chr10:20993391..20993415 (25 bp)
TTCCCTTTGCTGCTGTGTTATACTA
LOC_Os10g39850
Os.23245.1.A1_at--493--2191Chr10:20993359..20993383 (25 bp)
ACACATCAGCACTTTGGTTAGGTTT
LOC_Os10g39850
Os.23245.1.A1_at--674--2731Chr10:20993321..20993345 (25 bp)
AAGCAAGTCTTGCAATCTTTCTCTG
LOC_Os10g39850
Os.23245.1.A1_at--352--6131NONE
GAGTGGTTGAATCTGCCCCAAAAAT
NONE
Os.23245.1.A1_at--1107--6491Chr10:20993154..20993178 (25 bp)
GATATGTCATACCATTGATGCTCAG
LOC_Os10g39850
Target Sequence 
AATCAGCAACATCTCTTCGCCTATGGCGACGAGTCNCTGCGCGGAGTCCGGACATGGCGGCTGCCTTCACTCCAGACGTT
TGCTGATCTCAGGCCACACCGGCAACCGATCCTTGATNTGAGGTTTGCAGAGAGCTCGTCGACAGGGGAAAGGTACCTTG
GATGCTTGAGCGAGGACAGGCTGCAGGTTTTCAGAGTAAGGTAGCCCGTAGCAACAACATCAGAGACAGTCATTTGACTT
CAGTTCATTGTCTCTGTCTGTTAGCAGCTGTTCCCTTTGCTGCTGTGTTATACTATAGCATAACACATCAGCACTTTGGT
TAGGTTTGTTGTACAAGCACAAGCAAGTCTTGCAATCTTTCTCTGTACAGTACTGATCTCTAGAGCAGATGTCTAGTGCA
TAACATCATGTGTGATTTGTTTTGGGTGATAAAACCATGTATTAATTTTGTACTAGTATCATGAGTGGTTGAATCTGCCC
CAAAAATCAAAGGTACAGTTGGGTAGTGATATGTCATACCATTGATGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23245.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis