Browse Element(s) Details


Os.46516.1.S1_at

Description gb:AK069472.1
DB_XREF= gi:32979496
TID=Os.46516.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CorA-like Mg2+ transporter protein (OSJNBa0001O14.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019C12, full insert sequence.
FL= gb:AK069472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3979011/11CorA-like Mg2+ transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39770Os.46881.1.S2_at11/1110+20942029..20947104Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39770Os.46881.1.S1_at11/1110+20942029..20947104Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39780Os.3095.1.S1_at11/1110+20963398..20967794protein phosphatase 2C homolog, putative, expressed
LOC_Os10g39790Os.46516.1.S1_at11/1110+20968971..20972019CorA-like Mg2+ transporter protein, expressed
LOC_Os10g39800Os.46632.1.S1_at11/1110+20972324..20975976hypothetical protein
LOC_Os10g39810Os.3082.1.S1_at10/1110+20978768..20981722Sterol desaturase family protein, expressed
LOC_Os10g39820Os.3085.1.S1_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.47632.1.S1_s_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.15864.1.S1_s_at1/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46516.1.S1_at--1162--6791Chr10:20970115..20970139 (25 bp)
GTTTTCGGCGCAGCGTGAGCATCGC
LOC_Os10g39790
Os.46516.1.S1_at--825--1411Chr10:20970054..20970078 (25 bp)
AGAAATGTTGCTTGAGGCTTACTTC
LOC_Os10g39790
Os.46516.1.S1_at--246--6211Chr10:20970041..20970065 (25 bp)
GAGGCTTACTTCATGCAATTGGATG
LOC_Os10g39790
Os.46516.1.S1_at--849--5131Chr10:20970015..20970034 (20 bp)
GCAACAGAATTTTGTCGGTTCGAGA
LOC_Os10g39790
Os.46516.1.S1_at--428--4631Chr10:20969355..20969379 (25 bp)
GCGATGAACATCCAGAGCAAATTGT
LOC_Os10g39790
Os.46516.1.S1_at--103--1751Chr10:20969286..20969310 (25 bp)
ACCTCATCGGGCTGCTTCATGATCT
LOC_Os10g39790
Os.46516.1.S1_at--268--4911Chr10:20969273..20969297 (25 bp)
GCTTCATGATCTGCATCGTCTTATT
LOC_Os10g39790
Os.46516.1.S1_at--76--9551Chr10:20969255..20969279 (25 bp)
TCTTATTATGGTATGCCCGGTGGAA
LOC_Os10g39790
Os.46516.1.S1_at--513--5371Chr10:20969233..20969257 (25 bp)
GAAGAAGTTGCTCGGTCCTTGAACA
LOC_Os10g39790
Os.46516.1.S1_at--775--5711Chr10:20969192..20969216 (25 bp)
GACTCATGAGAACTGTCTCGCTGTA
LOC_Os10g39790
Os.46516.1.S1_at--418--7171Chr10:20969178..20969202 (25 bp)
GTCTCGCTGTAAAGGGCATGCATTT
LOC_Os10g39790
Target Sequence 
GTTTTCGGCGCAGCGTGAGCATCGCTACAAGCATGCATTTGGATAATGACGTGGAAGACCTAGAAATGTTGCTTGAGGCT
TACTTCATGCAATTGGATGGAATTCGCAACAGAATTTTGTCGGTTCGAGAGTATATTGATGATACAGAAGACTATGTCAA
TANTCAACTTGACAACCANGCGTAANGAACNTTATTCAGCNTTCAGCTTNNACACTGACTATNGCATCCTTCGGCATANC
TGTCAACACCTNTCATAGCTGGGGCTTTTGCGATGAACATCCAGAGCAAATTGTACANGCNTTGATGATGGTAGCTTCTN
TTNGCCATTTNTTGGGGGCACCTCATCGGGCTGCTTCATGATCTGCATCGTCTTATTATGGTATGCCCGGTGGAAGAAGT
TGCTCGGTCCTTGAACACNATGTNAACAAGTCACGACTCATGAGAACTGTCTCGCTGTAAAGGGCATGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis