Browse Element(s) Details


Os.46881.1.S2_at

Description gb:AK119332.1
DB_XREF= gi:37988955
TID=Os.46881.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0001O14.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-B11, full insert sequence.
FL= gb:AK119332.1 gb:AK061763.1 gb:AK105882.1 gb:AK099554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3977011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39750Os.46563.1.S1_a_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.1.S1_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.2.S1_x_at6/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39760Os.26471.1.S1_at11/1110+20923900..20927006transducin family protein, putative, expressed
LOC_Os10g39760Os.26471.2.S1_x_at8/1110+20923900..20927006transducin family protein, putative, expressed
LOC_Os10g39764NANA10+20939223..20939568NA
LOC_Os10g39770Os.46881.1.S2_at11/1110+20942029..20947104Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39770Os.46881.1.S1_at11/1110+20942029..20947104Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39780Os.3095.1.S1_at11/1110+20963398..20967794protein phosphatase 2C homolog, putative, expressed
LOC_Os10g39790Os.46516.1.S1_at11/1110+20968971..20972019CorA-like Mg2+ transporter protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46881.1.S2_at--341--3531Chr10:20946572..20946596 (25 bp)
CATGCATGTCAGATTGTCAGCTATC
LOC_Os10g39770
Os.46881.1.S2_at--57--10171Chr10:20946593..20946617 (25 bp)
TATCTGCTCCCTTGCAGAGTCAGAA
LOC_Os10g39770
Os.46881.1.S2_at--892--7551Chr10:20946628..20946652 (25 bp)
GGGCCAGAATTCAGCTGCGACGAAG
LOC_Os10g39770
Os.46881.1.S2_at--685--5391Chr10:20946649..20946673 (25 bp)
GAAGCAGCAGACAACGCTCGACATG
LOC_Os10g39770
Os.46881.1.S2_at--73--851Chr10:20946671..20946695 (25 bp)
ATGGAGCCGTAGTACATGAGCGTGT
LOC_Os10g39770
Os.46881.1.S2_at--401--10751Chr10:20946718..20946742 (25 bp)
TTGAAGAACCAACCACTCGACGAGT
LOC_Os10g39770
Os.46881.1.S2_at--353--9471Chr10:20946774..20946798 (25 bp)
TCTGGGTTTAAGCTCTGATCTGATC
LOC_Os10g39770
Os.46881.1.S2_at--140--8251Chr10:20946900..20946924 (25 bp)
GGCACACAAGCCCTGATGTATCATA
LOC_Os10g39770
Os.46881.1.S2_at--1051--1251Chr10:20946940..20946964 (25 bp)
AGATATTCACGCGACTAGCTACCTT
LOC_Os10g39770
Os.46881.1.S2_at--470--9991Chr10:20946955..20946979 (25 bp)
TAGCTACCTTAGTTAATTCCAGATG
LOC_Os10g39770
Os.46881.1.S2_at--1029--4311Chr10:20947047..20947071 (25 bp)
CCTTGCCTCTCTTATGATCGATGAT
LOC_Os10g39770
Target Sequence 
CATGCATGTCAGATTGTCAGCTATCTGCTCCCTTGCAGAGTCAGAAATGGAAGACGGGGCCAGAATTCAGCTGCGACGAA
GCAGCAGACAACGCTCGACATGGAGCCGTAGTACATGAGCGTGTATACAACGACTTGACAATTGTGTTGAAGAACCAACC
ACTCGACGAGTCGACGGAGACTTAAATATTATAGTTTTGTGCTCTGGGTTTAAGCTCTGATCTGATCATTGAGCATTATT
TGTCTGATGCTAATTAAGGTCAAAACTACACTTGTCTATATCGATTAGCATATTTGGAGAGACACGTGTATATAGCTGGG
GTCACTGTGGCACACAAGCCCTGATGTATCATATCCATAAGTATAAGCAGATATTCACGCGACTAGCTACCTTAGTTAAT
TCCAGATGTCTGATGGTTACAGCGTATATAAACAGTTAAAACACACGTTGAACTTCCCCCAACTCTGCATGTTTTCCTTG
CCTCTCTTATGATCGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46881.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis