Browse Element(s) Details


Os.26471.1.S1_at

Description gb:AK060182.1
DB_XREF= gi:32970200
TID=Os.26471.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative WD-40 repeat protein (OSJNBa0063E23.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-C03, full insert sequence.
FL= gb:AK060182.1 gb:AK073941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3976011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39730OsAffx.20157.1.S1_at11/1110+20899089..20900087hypothetical protein
LOC_Os10g39740Os.4607.1.S1_at11/1110+20901909..20903398Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os10g39744OsAffx.19796.1.S1_x_at3/1110+20911783..20912449hypothetical protein
LOC_Os10g39750Os.46563.1.S1_a_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.1.S1_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.2.S1_x_at6/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39760Os.26471.1.S1_at11/1110+20923900..20927006transducin family protein, putative, expressed
LOC_Os10g39760Os.26471.2.S1_x_at8/1110+20923900..20927006transducin family protein, putative, expressed
LOC_Os10g39764NANA10+20939223..20939568NA
LOC_Os10g39770Os.46881.1.S2_at11/1110+20942029..20947104Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39770Os.46881.1.S1_at11/1110+20942029..20947104Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26471.1.S1_at--922--8111Chr10:20926654..20926678 (25 bp)
GGACTCTGGAGATTGTAGTCTCAAC
LOC_Os10g39760
Os.26471.1.S1_at--30--3471Chr10:20926724..20926748 (25 bp)
CAGTGATGTTTTATCCTGTTTTCAT
LOC_Os10g39760
Os.26471.1.S1_at--958--4271Chr10:20926738..20926762 (25 bp)
CCTGTTTTCATGGACGTGTGTTTTT
LOC_Os10g39760
Os.26471.1.S1_at--912--7451Chr10:20926753..20926777 (25 bp)
GTGTGTTTTTCAGTTAGCGGTGTAT
LOC_Os10g39760
Os.26471.1.S1_at--772--3971Chr10:20926770..20926794 (25 bp)
CGGTGTATGAGTGCCAGATGTTCCT
LOC_Os10g39760
Os.26471.1.S1_at--741--1291Chr10:20926785..20926809 (25 bp)
AGATGTTCCTGATCTATCTCCATCA
LOC_Os10g39760
Os.26471.1.S1_at--466--9311Chr10:20926817..20926841 (25 bp)
TCCCGCCCATTGATCCAGTGAACAA
LOC_Os10g39760
Os.26471.1.S1_at--84--6371Chr10:20926828..20926852 (25 bp)
GATCCAGTGAACAAACTAGCACGTA
LOC_Os10g39760
Os.26471.1.S1_at--794--9991Chr10:20926844..20926868 (25 bp)
TAGCACGTACAGAGAATTCAGATTC
LOC_Os10g39760
Os.26471.1.S1_at--604--111Chr10:20926865..20926889 (25 bp)
ATTCTCTTCAAGCATATGTCAAGTG
LOC_Os10g39760
Os.26471.1.S1_at--992--2091Chr10:20926941..20926965 (25 bp)
ACATCTGTTCAGTTAGTGAGCCTAC
LOC_Os10g39760
Target Sequence 
GGACTCTGGAGATTGTAGTCTCAACTNATCTATGGCTCAACNCTGGAAACATTGCTAAATTGTACATATACAGTGATGTT
TTATCCTGTTTTCATGGACGTGTGTTTTTCAGTTAGCGGTGTATGAGTGCCAGATGTTCCTGATCTATCTCCATCATCTC
CACTCCCGCCCATTGATCCAGTGAACAAACTAGCACGTACAGAGAATTCAGATTCTCTTCAAGCATATGTCAAGTGTAAA
TAAGTTCACATAAATAAGCAGACATACAATACATAACCATGTCTATAACATCTGTTCAGTTAGTGAGCCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis