Browse Element(s) Details


OsAffx.20157.1.S1_at

Description gb:NM_197601.1
DB_XREF= gi:37536561
TID=OsAffx.20157.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0015I11.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3973011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39670Os.2946.1.S1_at11/1110+20870084..20875005protein kinase family protein, putative, expressed
LOC_Os10g39680Os.3415.1.S1_at11/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39680Os.3415.1.S1_s_at10/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39690Os.46189.1.S1_at11/1110+20878687..20879826expressed protein
LOC_Os10g39690OsAffx.19145.1.S1_x_at1/1110+20878687..20879826expressed protein
LOC_Os10g39700Os.3415.1.S1_s_at4/1110+20889904..20892400Chitinase class I family protein
LOC_Os10g39710NANA10+20894682..20896709Strictosidine synthase family protein, expressed
LOC_Os10g39720Os.23043.1.A1_x_at4/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39720Os.23043.1.A1_at2/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39730OsAffx.20157.1.S1_at11/1110+20899089..20900087hypothetical protein
LOC_Os10g39740Os.4607.1.S1_at11/1110+20901909..20903398Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os10g39744OsAffx.19796.1.S1_x_at3/1110+20911783..20912449hypothetical protein
LOC_Os10g39750Os.46563.1.S1_a_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.1.S1_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.2.S1_x_at6/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39760Os.26471.1.S1_at11/1110+20923900..20927006transducin family protein, putative, expressed
LOC_Os10g39760Os.26471.2.S1_x_at8/1110+20923900..20927006transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20157.1.S1_at--67--1831Chr10:20899597..20899621 (25 bp)
ACGCCGTGCCGTACAAGAAGTTCAC
LOC_Os10g39730
OsAffx.20157.1.S1_at--701--7031Chr10:20899607..20899631 (25 bp)
GTACAAGAAGTTCACCTCCCCGAAG
LOC_Os10g39730
OsAffx.20157.1.S1_at--320--3211Chr10:20899739..20899763 (25 bp)
CAAGGACTACTGGTCGTGCGCCGAG
LOC_Os10g39730
OsAffx.20157.1.S1_at--111--8412Chr10:20899788..20899812 (25 bp)
GGCGCGCTCGCGATCCTGGACACGA
LOC_Os10g39730
OsAffx.20157.1.S1_at--23--571Chr10:20899800..20899824 (25 bp)
ATCCTGGACACGATCATGCTGCGGC
LOC_Os10g39730
OsAffx.20157.1.S1_at--211--9411Chr10:20899858..20899882 (25 bp)
TCGTCAACGCCATGGAGTTCAACTG
LOC_Os10g39730
OsAffx.20157.1.S1_at--671--831Chr10:20899869..20899893 (25 bp)
ATGGAGTTCAACTGCGGCACGAGCT
LOC_Os10g39730
OsAffx.20157.1.S1_at--1124--5091Chr10:20899885..20899909 (25 bp)
GCACGAGCTCCGTCCTCGAGGTGGT
LOC_Os10g39730
OsAffx.20157.1.S1_at--407--4231Chr10:20899912..20899936 (25 bp)
CCGAGACGCGCAACGCGCTGGAAGA
LOC_Os10g39730
OsAffx.20157.1.S1_at--161--911Chr10:20899941..20899965 (25 bp)
AGGCGAGAGATGGACCTCCCGGAAA
LOC_Os10g39730
OsAffx.20157.1.S1_at--61--851Chr10:20899950..20899974 (25 bp)
ATGGACCTCCCGGAAATGATGCAGA
LOC_Os10g39730
Target Sequence 
ACGCCGTGCCGTACAAGAAGTTCACCTCCCCGAAGCGGAAGACGCGGCCCGACCACCGCCTCGCCCGCACCATCGTCTCT
GTCTCGCCGGCGACGCTCTACCTGAGCCACCGCTCCGACTGCGTCGGCGGCGACAGCGACAGCAAGGACTACTGGTCGTG
CGCCGAGGTGGCCCCCGACGTGGCCGCCGGCGGCGCGCTCGCGATCCTGGACACGATCATGCTGCGGCTGGAGGCGGCGA
TCCATCTGGAGGAGAACATCCTCGTCAACGCCATGGAGTTCAACTGCGGCACGAGCTCCGTCCTCGAGGTGGTGGCCGAG
ACGCGCAACGCGCTGGAAGAGATGAGGCGAGAGATGGACCTCCCGGAAATGATGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis