Browse Element(s) Details


Os.2946.1.S1_at

Description gb:AK121234.1
DB_XREF= gi:37990857
TID=Os.2946.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.2946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) protein kinase-like protein (OSJNBb0015I11.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093M21, full insert sequence.
FL= gb:AK121234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3967011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39640Os.2938.1.S1_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39640Os.2938.1.S1_x_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39660Os.47369.1.A1_at10/1110+20860285..20861389expressed protein
LOC_Os10g39670Os.2946.1.S1_at11/1110+20870084..20875005protein kinase family protein, putative, expressed
LOC_Os10g39680Os.3415.1.S1_at11/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39680Os.3415.1.S1_s_at10/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39690Os.46189.1.S1_at11/1110+20878687..20879826expressed protein
LOC_Os10g39690OsAffx.19145.1.S1_x_at1/1110+20878687..20879826expressed protein
LOC_Os10g39700Os.3415.1.S1_s_at4/1110+20889904..20892400Chitinase class I family protein
LOC_Os10g39710NANA10+20894682..20896709Strictosidine synthase family protein, expressed
LOC_Os10g39720Os.23043.1.A1_x_at4/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39720Os.23043.1.A1_at2/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39730OsAffx.20157.1.S1_at11/1110+20899089..20900087hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2946.1.S1_at--931--251Chr10:20874412..20874436 (25 bp)
ATATGCCAGACGGAGCTTGTGCCAC
LOC_Os10g39670
Os.2946.1.S1_at--114--5931Chr10:20874424..20874448 (25 bp)
GAGCTTGTGCCACCTTATGTGTGAC
LOC_Os10g39670
Os.2946.1.S1_at--57--6351Chr10:20874455..20874479 (25 bp)
GATGCTGCACTCAGGGACGCAATGC
LOC_Os10g39670
Os.2946.1.S1_at--43--5131Chr10:20874482..20874506 (25 bp)
GCACAGTGTGTGTATCCCGATTGGC
LOC_Os10g39670
Os.2946.1.S1_at--1145--5011Chr10:20874527..20874551 (25 bp)
GCAGTGGCGCTCTCAAAGCTGAACA
LOC_Os10g39670
Os.2946.1.S1_at--982--6111Chr10:20874556..20874580 (25 bp)
GAGTGACTCTTTGGACATGTTGAAC
LOC_Os10g39670
Os.2946.1.S1_at--576--10431Chr10:20874641..20874665 (25 bp)
TTAGGCTCAGAGAAGCGGCGTTCCA
LOC_Os10g39670
Os.2946.1.S1_at--946--5391Chr10:20874666..20874690 (25 bp)
GAAGCTGGCACTTATCTGTAGTATA
LOC_Os10g39670
Os.2946.1.S1_at--959--731Chr10:20874728..20874752 (25 bp)
ATGTTTACCGGCGTGTCGTATGATT
LOC_Os10g39670
Os.2946.1.S1_at--628--211Chr10:20874767..20874791 (25 bp)
ATTTGGTTTGGCTTCCTACGATAGG
LOC_Os10g39670
Os.2946.1.S1_at--1074--10691Chr10:20874874..20874898 (25 bp)
TTGCTGGTTGTTCACAAGGGTCCTT
LOC_Os10g39670
Target Sequence 
ATATGCCAGACGGAGCTTGTGCCACCTTATGTGTGACCAACCTGATGCTGCACTCAGGGACGCAATGCAAGCACAGTGTG
TGTATCCCGATTGGCCCACAGCTTTCTACATGCAGGCAGTGGCGCTCTCAAAGCTGAACATGCAGAGTGACTCTTTGGAC
ATGTTGAACGAGGCATCACAGCTAGAAGAGAAGAGGCAAAAGAGCATAAAAGGTCCATGAAGAACTTGTTTAGGCTCAGA
GAAGCGGCGTTCCAGAAGCTGGCACTTATCTGTAGTATATTGCGGGGTTAGGAGTTAGAAGACCTATTTGGAGAAGATGT
TTACCGGCGTGTCGTATGATTAAAAAGGAAAACCCATTTGGTTTGGCTTCCTACGATAGGAGATGCATTTTTTTGGACCC
ATGTATATAACATCTGTTGAATAGTTAGAGCATGGGAGTTCATTTGTGGTGGCTAAAGAGTGTTGCTGGTTGTTCACAAG
GGTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis