Browse Element(s) Details


Os.3415.1.S1_s_at

Description gb:AB016497.1
DB_XREF= gi:3370779
GEN=Rcht2
TID=Os.3415.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3415 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for chitinase, complete cds.
PROD=chitinase
FL= gb:AB016497.1 gb:AK070067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3968010/11Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g397004/11Chitinase class I family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39640Os.2938.1.S1_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39640Os.2938.1.S1_x_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39660Os.47369.1.A1_at10/1110+20860285..20861389expressed protein
LOC_Os10g39670Os.2946.1.S1_at11/1110+20870084..20875005protein kinase family protein, putative, expressed
LOC_Os10g39680Os.3415.1.S1_at11/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39680Os.3415.1.S1_s_at10/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39690Os.46189.1.S1_at11/1110+20878687..20879826expressed protein
LOC_Os10g39690OsAffx.19145.1.S1_x_at1/1110+20878687..20879826expressed protein
LOC_Os10g39700Os.3415.1.S1_s_at4/1110+20889904..20892400Chitinase class I family protein
LOC_Os10g39710NANA10+20894682..20896709Strictosidine synthase family protein, expressed
LOC_Os10g39720Os.23043.1.A1_x_at4/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39720Os.23043.1.A1_at2/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39730OsAffx.20157.1.S1_at11/1110+20899089..20900087hypothetical protein
LOC_Os10g39740Os.4607.1.S1_at11/1110+20901909..20903398Glutathione S-transferase, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004568molecular_functionchitinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3415.1.S1_s_at--20--351Chr10:20876486..20876510 (25 bp)
ATAAACAAGGCGACTTCTCCACCCT
LOC_Os10g39680
Os.3415.1.S1_s_at--8--1812Chr10:20890379..20890403 (25 bp)
ACCCTACTATGGACGTGGCCCAATT
LOC_Os10g39700
Os.3415.1.S1_s_at--519--8532Chr10:20890388..20890412 (25 bp)
TGGACGTGGCCCAATTCAATTGACA
LOC_Os10g39700
Os.3415.1.S1_s_at--1140--10731NONE
TTGACAGGGCAATCGAACTACCAAG
NONE
Os.3415.1.S1_s_at--921--5471Chr10:20877299..20877323 (25 bp)
GAACTACCAAGCAGCCGGGAACGCG
LOC_Os10g39680
Os.3415.1.S1_s_at--976--4711Chr10:20877329..20877353 (25 bp)
GCTGGACCTGGTGGGCAACCCAGAC
LOC_Os10g39680
Os.3415.1.S1_s_at--1130--7471Chr10:20877339..20877363 (25 bp)
GTGGGCAACCCAGACCTGGTGTCCA
LOC_Os10g39680
Os.3415.1.S1_s_at--43--1872Chr10:20892162..20892186 (25 bp)
ACGACGTCATCCTCGGCCGGTGGAC
LOC_Os10g39700
Os.3415.1.S1_s_at--199--4972Chr10:20892300..20892324 (25 bp)
GCATCGGCTACTACAAGCGCTACTG
LOC_Os10g39700
Os.3415.1.S1_s_at--1009--7391Chr10:20877755..20877779 (25 bp)
GTGATGTAGTATCCCAACATGAATA
LOC_Os10g39680
Os.3415.1.S1_s_at--1051--6871Chr10:20877763..20877787 (25 bp)
GTATCCCAACATGAATAAAGGTCTT
LOC_Os10g39680
Target Sequence 
ATAAACAAGGCGACTTCTCCACCCTACTATGGACGTGGCCCAATTCAATTGACAGGGCAATCGAACTACCAAGCAGCCGG
GAACGCGCTGGGGCTGGACCTGGTGGGCAACCCAGACCTGGTGTCCACCGACGCCGTGGTCTCCTTCAAGACGGCCATCT
GGTTCTGGATGACGGCGCAGGGGAACAAGCCGTCGTGCCACGACGTCATCCTCGGCCGGTGGACGCCGTCGGCGGCGGAA
CACCGCCGCCGGCCGCGTCCCCGGGTATGGCGTCATCACCAACATCATCAACGGCGGCATCGAGTGCGGCGTCGGCCAGA
ACGACGCCAACGTCGACCGCATCGGCTACTACAAGCGCTACTGCGACATGCTCGGCGCAGGCTACGGCAGCAACCTCGAC
TGCTACAACCAGCGCAACTTCGCCAGCTAGCTAGCTGAGTGATCGATCGATCCATCGGATTGTTATCCTATTGCATGATC
GTTCGATCAGTTAGTACTACCAATAAAAACTGGCATGTAGTGATGTAGTATCCCAACATGAATAAAGGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3415.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis