Browse Element(s) Details


Os.46189.1.S1_at

Description gb:NM_197597.1
DB_XREF= gi:37536553
TID=Os.46189.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46189 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0015I11.15), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3969011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39660Os.47369.1.A1_at10/1110+20860285..20861389expressed protein
LOC_Os10g39670Os.2946.1.S1_at11/1110+20870084..20875005protein kinase family protein, putative, expressed
LOC_Os10g39680Os.3415.1.S1_at11/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39680Os.3415.1.S1_s_at10/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39690Os.46189.1.S1_at11/1110+20878687..20879826expressed protein
LOC_Os10g39690OsAffx.19145.1.S1_x_at1/1110+20878687..20879826expressed protein
LOC_Os10g39700Os.3415.1.S1_s_at4/1110+20889904..20892400Chitinase class I family protein
LOC_Os10g39710NANA10+20894682..20896709Strictosidine synthase family protein, expressed
LOC_Os10g39720Os.23043.1.A1_x_at4/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39720Os.23043.1.A1_at2/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39730OsAffx.20157.1.S1_at11/1110+20899089..20900087hypothetical protein
LOC_Os10g39740Os.4607.1.S1_at11/1110+20901909..20903398Glutathione S-transferase, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46189.1.S1_at--600--2951Chr10:20879685..20879709 (25 bp)
AATGGCGCCCGTAGCCCTAAAGGAT
LOC_Os10g39690
Os.46189.1.S1_at--772--11Chr10:20879673..20879697 (25 bp)
AGCCCTAAAGGATGGTGGACAACGA
LOC_Os10g39690
Os.46189.1.S1_at--621--8131Chr10:20879657..20879681 (25 bp)
GGACAACGACGAGACTACCATCCGT
LOC_Os10g39690
Os.46189.1.S1_at--321--1871Chr10:20879649..20879673 (25 bp)
ACGAGACTACCATCCGTGCGCGCAT
LOC_Os10g39690
Os.46189.1.S1_at--814--4411Chr10:20879404..20879428 (25 bp)
GCCAGCTTTGCGTTGCCTCATCTCA
LOC_Os10g39690
Os.46189.1.S1_at--72--10711Chr10:20879397..20879421 (25 bp)
TTGCGTTGCCTCATCTCACTACAGT
LOC_Os10g39690
Os.46189.1.S1_at--564--4832Chr10:22094287..22094306 (20 bp)
GCTCACTGCAGCTCGTTGCTTCGCA
NONE
Os.46189.1.S1_at--223--9331Chr10:20879320..20879340 (21 bp)
TCGCCGCATCGAAGGAGAGGGCCCA
LOC_Os10g39690
Os.46189.1.S1_at--1097--3511Chr10:20878855..20879334 (25 bp)
CATCGAAGGAGAGGGCCCAGGACCT
LOC_Os10g39690
Os.46189.1.S1_at--500--3831Chr10:20878754..20878778 (25 bp)
CTGCGCACTCTAACACAGAGAGGGT
LOC_Os10g39690
Os.46189.1.S1_at--921--1591Chr10:20878720..20878744 (25 bp)
AGCTGTTGGAGCAAGCAACGACTTT
LOC_Os10g39690
Target Sequence 
AATGGCGCCCGTAGCCCTAAAGGATGGTGGACAACGACGAGACTACCATCCGTGCGCGCATCCTCTCCTATGCNAGTGGC
GGNGGCGTACTGCAGCCAGCGGAGGCGGTGCTGCAGCCGCCGTCCTACACCTGCNGCTTCCGCCGGCCTACACCTGCCGC
TTCCGCCACCGCCTCCGCTCACGGCAGCCCGCAGCCTCAACTCGCCATAGCCGCCGCCTCCGCTTGCCTCAGTCGCCGGC
CTCCGCTCGCCACCACCCACCGCCTCCGCTCGCCGCAGCCCGCCAGCTTTGCGTTGCCTCATCTCACTACAGTCCGCCGC
CGCTCACTGCAGCTCGTTGCTTCGCACGCCCGCGGCCTGCCGTCCGCCGTCGCCGCATCGAAGGAGAGGGCCCAGGACCT
AAAGTTTTGGCTCCGGTTGGGCCTGTGGTGAAGCAGGCCCAATGTGACCTGGGTGGCCCACGATTGTTGGGCCGAGCTGC
GCACTCTAACACAGAGAGGGTAGATAGAGAAGCTGTTGGAGCAAGCAACGACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis