Browse Element(s) Details


Os.4607.1.S1_at

Description gb:AB103350.1
DB_XREF= gi:37693459
GEN=GST
TID=Os.4607.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4607 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) GST mRNA for glutathione S-transferase, complete cd.
PROD=glutathione S-transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3974011/11Glutathione S-transferase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39680Os.3415.1.S1_at11/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39680Os.3415.1.S1_s_at10/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39690Os.46189.1.S1_at11/1110+20878687..20879826expressed protein
LOC_Os10g39690OsAffx.19145.1.S1_x_at1/1110+20878687..20879826expressed protein
LOC_Os10g39700Os.3415.1.S1_s_at4/1110+20889904..20892400Chitinase class I family protein
LOC_Os10g39710NANA10+20894682..20896709Strictosidine synthase family protein, expressed
LOC_Os10g39720Os.23043.1.A1_x_at4/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39720Os.23043.1.A1_at2/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39730OsAffx.20157.1.S1_at11/1110+20899089..20900087hypothetical protein
LOC_Os10g39740Os.4607.1.S1_at11/1110+20901909..20903398Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os10g39744OsAffx.19796.1.S1_x_at3/1110+20911783..20912449hypothetical protein
LOC_Os10g39750Os.46563.1.S1_a_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.1.S1_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.2.S1_x_at6/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39760Os.26471.1.S1_at11/1110+20923900..20927006transducin family protein, putative, expressed
LOC_Os10g39760Os.26471.2.S1_x_at8/1110+20923900..20927006transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009407biological_processtoxin catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009507cellular_componentchloroplast
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4607.1.S1_at--955--9471Chr10:20902241..20902265 (25 bp)
TCTCCGGCCGCGAGTCGTGGAAGCA
LOC_Os10g39740
Os.4607.1.S1_at--238--7531Chr10:20902225..20902249 (25 bp)
GTGGAAGCAGGTCAAGAGCCTCAAC
LOC_Os10g39740
Os.4607.1.S1_at--845--8851Chr10:20902173..20902197 (25 bp)
TGATGATGAGGTCAGCCACCGTGCT
LOC_Os10g39740
Os.4607.1.S1_at--72--7811Chr10:20902089..20902113 (25 bp)
GGTCGCTTTGCTTTATGATTCGTGC
LOC_Os10g39740
Os.4607.1.S1_at--703--9411Chr10:20902070..20902094 (25 bp)
TCGTGCTGCGTACACATTTTCCAAT
LOC_Os10g39740
Os.4607.1.S1_at--735--7071Chr10:20902030..20902054 (25 bp)
GTCAATAACCGGACACGTACGTTCG
LOC_Os10g39740
Os.4607.1.S1_at--697--6991Chr10:20902014..20902038 (25 bp)
GTACGTTCGTGTTCGCGCCATATAT
LOC_Os10g39740
Os.4607.1.S1_at--714--4151Chr10:20902001..20902025 (25 bp)
CGCGCCATATATATCCTGCTGCTGT
LOC_Os10g39740
Os.4607.1.S1_at--1053--9091Chr10:20901985..20902009 (25 bp)
TGCTGCTGTTGGTGAATTCCGAGTG
LOC_Os10g39740
Os.4607.1.S1_at--311--5211Chr10:20901972..20901996 (25 bp)
GAATTCCGAGTGGTCACATTATTAT
LOC_Os10g39740
Os.4607.1.S1_at--1082--9731Chr10:20901918..20901942 (25 bp)
TCAATAAAATGCTTGCCCCTTTGTC
LOC_Os10g39740
Target Sequence 
TCTCCGGCCGCGAGTCGTGGAAGCAGGTCAAGAGCCTCAACCGCCCGCCCTCCGCCGAGGCTCCCTTCTGATGATGAGGT
CAGCCACCGTGCTCTTCCGGCCGCCGGCGGCGGCGGCGGCGGCCGGCGAGAGGAGGAGGAGGAGGAGAAGGGGGTCGCTT
TGCTTTATGATTCGTGCTGCGTACACATTTTCCAATGTCGTCGTCGTCGTCGTCAATAACCGGACACGTACGTTCGTGTT
CGCGCCATATATATCCTGCTGCTGTTGGTGAATTCCGAGTGGTCACATTATTATATTATATAACTGTCAGTCTTGTAACA
AGTTCAATAAAATGCTTGCCCCTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis