Browse Element(s) Details


Os.23043.1.A1_at

Description gb:NM_197600.1
DB_XREF= gi:37536559
TID=Os.23043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23043 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative homeobox-leucine zipper protein (OSJNBb0015I11.18), mRNA.
PROD=putative homeobox-leucine zipper protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g397202/11Homeobox domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39670Os.2946.1.S1_at11/1110+20870084..20875005protein kinase family protein, putative, expressed
LOC_Os10g39680Os.3415.1.S1_at11/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39680Os.3415.1.S1_s_at10/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39690Os.46189.1.S1_at11/1110+20878687..20879826expressed protein
LOC_Os10g39690OsAffx.19145.1.S1_x_at1/1110+20878687..20879826expressed protein
LOC_Os10g39700Os.3415.1.S1_s_at4/1110+20889904..20892400Chitinase class I family protein
LOC_Os10g39710NANA10+20894682..20896709Strictosidine synthase family protein, expressed
LOC_Os10g39720Os.23043.1.A1_x_at4/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39720Os.23043.1.A1_at2/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39730OsAffx.20157.1.S1_at11/1110+20899089..20900087hypothetical protein
LOC_Os10g39740Os.4607.1.S1_at11/1110+20901909..20903398Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os10g39744OsAffx.19796.1.S1_x_at3/1110+20911783..20912449hypothetical protein
LOC_Os10g39750Os.46563.1.S1_a_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.1.S1_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.2.S1_x_at6/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23043.1.A1_at--603--6511Chr10:20899003..20899027 (25 bp)
GATTTGGCGGGAAGCGGAGGCGCCG
NONE
Os.23043.1.A1_at--1064--5372Chr01:30101460..30101479 (20 bp)
GAAGCGTGGGCTGGACCGTCCGGCT
NONE
Os.23043.1.A1_at--575--3951Chr10:20898254..20898278 (25 bp)
CGGCAAGCGTGGTGCGCCATCTGCC
LOC_Os10g39720
Os.23043.1.A1_at--700--6671Chr10:20897686..20897710 (25 bp)
GTTGCTCAAGCGTTGCTGCGAGACT
NONE
Os.23043.1.A1_at--611--9091Chr10:20897684..20897708 (25 bp)
TGCTCAAGCGTTGCTGCGAGACTCC
NONE
Os.23043.1.A1_at--218--3751Chr10:20897682..20897706 (25 bp)
CTCAAGCGTTGCTGCGAGACTCCCA
NONE
Os.23043.1.A1_at--402--9151Chr10:20897670..20897694 (25 bp)
TGCGAGACTCCCACCGACATGAAGT
NONE
Os.23043.1.A1_at--425--5991Chr10:20897667..20897691 (25 bp)
GAGACTCCCACCGACATGAAGTTGA
NONE
Os.23043.1.A1_at--849--5671Chr10:20897665..20897689 (25 bp)
GACTCCCACCGACATGAAGTTGAAG
NONE
Os.23043.1.A1_at--839--3791Chr10:20897663..20897687 (25 bp)
CTCCCACCGACATGAAGTTGAAGCG
NONE
Os.23043.1.A1_at--588--4171Chr10:20897661..20897685 (25 bp)
CCCACCGACATGAAGTTGAAGCGGG
NONE
Target Sequence 
GATTTGGCGGGAAGCGGAGGCGCCGCCGCGGCGGCTGACAGAAGCGTGGGCTGGACCGTCCGGCTGCTGCCCGTCGTGTC
CTCCCCCAATAGCACGCTCTCCAGCCTCAGCGGCAAGCGTGGTGCGCCATCTGCCGCTGCCGCCGCCGTCGGCGGCAGCG
ACGACGAGGACTCCGACGACGGATCCCGCAAGAAGCTCCGCCTCTCCAAGGACCAAGCCGCCGTCCTCGAGGACACCTTC
AACAAGCACAACACCCTCAACCCCAAGCAGAAGGCGGCGCTGGCGAGGCAGCTGAATCTGAAGCCGCGGCAGACGGAGGT
GGACTGCGAGTTGCTCAAGCGTTGCTGCGAGACTCCCACCGACATGAAGTTGAAGCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23043.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis