Browse Element(s) Details


Os.46563.2.S1_x_at

Description gb:NM_197603.1
DB_XREF= gi:37536565
TID=Os.46563.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0015I11.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0015I11.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g397506/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39700Os.3415.1.S1_s_at4/1110+20889904..20892400Chitinase class I family protein
LOC_Os10g39710NANA10+20894682..20896709Strictosidine synthase family protein, expressed
LOC_Os10g39720Os.23043.1.A1_x_at4/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39720Os.23043.1.A1_at2/1110+20897769..20898486Homeobox domain containing protein
LOC_Os10g39730OsAffx.20157.1.S1_at11/1110+20899089..20900087hypothetical protein
LOC_Os10g39740Os.4607.1.S1_at11/1110+20901909..20903398Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os10g39744OsAffx.19796.1.S1_x_at3/1110+20911783..20912449hypothetical protein
LOC_Os10g39750Os.46563.1.S1_a_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.1.S1_at11/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39750Os.46563.2.S1_x_at6/1110+20915040..20917397Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g39760Os.26471.1.S1_at11/1110+20923900..20927006transducin family protein, putative, expressed
LOC_Os10g39760Os.26471.2.S1_x_at8/1110+20923900..20927006transducin family protein, putative, expressed
LOC_Os10g39764NANA10+20939223..20939568NA
LOC_Os10g39770Os.46881.1.S2_at11/1110+20942029..20947104Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39770Os.46881.1.S1_at11/1110+20942029..20947104Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46563.2.S1_x_at--430--4891Chr10:20916385..20916406 (22 bp)
GCTTATCAGAAACTCGACGAGGTTC
LOC_Os10g39750
Os.46563.2.S1_x_at--1015--9371Chr10:20915974..20915998 (25 bp)
TCGAGATGGCATGCGCGGCGATCCC
LOC_Os10g39750
Os.46563.2.S1_x_at--908--5931Chr10:20915897..20915921 (25 bp)
GAGCAGTGCGTCATCAGCTGCTTCG
LOC_Os10g39750
Os.46563.2.S1_x_at--553--391Chr10:20915885..20915909 (25 bp)
ATCAGCTGCTTCGATGACTTCGCCA
LOC_Os10g39750
Os.46563.2.S1_x_at--525--9071Chr10:20915879..20915903 (25 bp)
TGCTTCGATGACTTCGCCATGCAGG
LOC_Os10g39750
Os.46563.2.S1_x_at--863--671Chr10:20915872..20915896 (25 bp)
ATGACTTCGCCATGCAGGCCTCCTG
LOC_Os10g39750
Os.46563.2.S1_x_at--96--3991Chr10:20914237..20914261 (25 bp)
CGGGAGCAGAGGTCCAGGTTCTACA
NONE
Os.46563.2.S1_x_at--690--5031Chr10:20914232..20914256 (25 bp)
GCAGAGGTCCAGGTTCTACATCTTC
NONE
Os.46563.2.S1_x_at--13--9891Chr10:20914216..20914240 (25 bp)
TACATCTTCCGCAGGTGCGTCGCCA
NONE
Os.46563.2.S1_x_at--411--611Chr10:20914192..20914216 (25 bp)
ATGCTCCTCTGCTGGTACAAGTACA
NONE
Os.46563.2.S1_x_at--43--2851Chr10:20914179..20914198 (20 bp)
AAGTACAGGAACATCACACCCCTTC
NONE
Target Sequence 
GCTTATCAGAAACTCGACGAGGTTCGAGGTGGAGAGGAGGGAGAACGGAAGCACGAGGATCGAGATGGCATGCGCGGCGA
TCCCCGAGCTGCTGCCGTCGACGCTGGCCGCGCTGGAGGCGCTGGGCGTGGAGATCGAGCAGTGCGTCATCAGCTGCTTC
GATGACTTCGCCATGCAGGCCTCCTGCCTACAGGCGGCGGCGCGGGAGCAGAGGTCCAGGTTCTACATCTTCCGCAGGTG
CGTCGCCATGCTCCTCTGCTGGTACAAGTACAGGAACATCACACCCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46563.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis