Browse Element(s) Details


Os.3085.1.S1_at

Description gb:AK121559.1
DB_XREF= gi:37991182
TID=Os.3085.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3085 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger protein (OSJNBa0001O14.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034B05, full insert sequence.
FL= gb:AK065156.1 gb:AK121559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3982011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39780Os.3095.1.S1_at11/1110+20963398..20967794protein phosphatase 2C homolog, putative, expressed
LOC_Os10g39790Os.46516.1.S1_at11/1110+20968971..20972019CorA-like Mg2+ transporter protein, expressed
LOC_Os10g39800Os.46632.1.S1_at11/1110+20972324..20975976hypothetical protein
LOC_Os10g39810Os.3082.1.S1_at10/1110+20978768..20981722Sterol desaturase family protein, expressed
LOC_Os10g39820Os.3085.1.S1_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.47632.1.S1_s_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.15864.1.S1_s_at1/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39860Os.32501.1.S1_a_at11/1110+20998536..21000958rhodanese, putative, expressed
LOC_Os10g39870Os.46896.1.S1_at10/1110+21001807..21002970cytochrome c biogenesis protein CcmE family, putative, expressed
LOC_Os10g39880Os.46404.1.S1_x_at7/1110+21004969..21006142Photosystem Q, putative
LOC_Os10g39890OsAffx.20155.1.S1_at10/1110+21008624..21009742Pollen proteins Ole e I family protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3085.1.S1_at--548--3071Chr10:20982227..20982251 (25 bp)
AATCATATCTCGTGCTTTATGCCTT
LOC_Os10g39820
Os.3085.1.S1_at--880--2551Chr10:20982126..20982150 (25 bp)
AACTGCGATACTCGTTGATCGGTGA
LOC_Os10g39820
Os.3085.1.S1_at--597--1211Chr10:20982055..20982079 (25 bp)
AGTTAGTCTTATATGCCTTGCAGTT
LOC_Os10g39820
Os.3085.1.S1_at--627--9391Chr10:20982027..20982051 (25 bp)
TCTGTGTGTTTTTATACCCCAAACT
LOC_Os10g39820
Os.3085.1.S1_at--331--291Chr10:20982014..20982038 (25 bp)
ATACCCCAAACTGTAGTCTGTACTT
LOC_Os10g39820
Os.3085.1.S1_at--1147--8751Chr10:20982003..20982027 (25 bp)
TGTAGTCTGTACTTCCAATCCGGTA
LOC_Os10g39820
Os.3085.1.S1_at--239--3031Chr10:20981987..20982011 (25 bp)
AATCCGGTACTGAAGCGCCCTTTTG
LOC_Os10g39820
Os.3085.1.S1_at--569--8991Chr10:20981977..20982001 (25 bp)
TGAAGCGCCCTTTTGAACTGGCACA
LOC_Os10g39820
Os.3085.1.S1_at--1138--8971Chr10:20981964..20981988 (25 bp)
TGAACTGGCACACAAGCTCGGCATT
LOC_Os10g39820
Os.3085.1.S1_at--797--2691Chr10:20981951..20981975 (25 bp)
AAGCTCGGCATTGCTCCGTTGCAAG
LOC_Os10g39820
Os.3085.1.S1_at--833--7391Chr10:20981900..20981924 (25 bp)
GTGTGAACGTAATTCGGGTAATTCG
LOC_Os10g39820
Target Sequence 
AATCATATCTCGTGCTTTATGCCTTAAGAATGTTAGTGTATTTCAGATACTTCAGTTTTCATAGTTTGTCAGCTTACTTG
TATTTGTCGGTTCTGCTGTTTAACTGCGATACTCGTTGATCGGTGAGGATGAATTCCAGATGGGATACTTGTTTTAATTC
CTACAAACTTGAAGTTAGTCTTATATGCCTTGCAGTTGCNTCTGTGTGTTTTTATACCCCAAACTGTAGTCTGTACTTCC
AATCCGGTACTGAAGCGCCCTTTTGAACTGGCACACAAGCTCGGCATTGCTCCGTTGCAAGCTTTTTTTCTACCCCCTAA
TTTTGGTGTGTGAACGTAATTCGGGTAATTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis