Browse Element(s) Details


Os.26378.1.A1_at

Description gb:AK103033.1
DB_XREF= gi:32988242
TID=Os.26378.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.26378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0001O14.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117D05, full insert sequence.
FL= gb:AK103033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3991011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39860Os.32501.1.S1_a_at11/1110+20998536..21000958rhodanese, putative, expressed
LOC_Os10g39870Os.46896.1.S1_at10/1110+21001807..21002970cytochrome c biogenesis protein CcmE family, putative, expressed
LOC_Os10g39880Os.46404.1.S1_x_at7/1110+21004969..21006142Photosystem Q, putative
LOC_Os10g39890OsAffx.20155.1.S1_at10/1110+21008624..21009742Pollen proteins Ole e I family protein
LOC_Os10g39900Os.22919.1.S1_at11/1110+21011214..21018389expressed protein
LOC_Os10g39910Os.26378.1.A1_at11/1110+21020287..21029467expressed protein
LOC_Os10g39920Os.37876.1.S1_at11/1110+21030374..21031359expressed protein
LOC_Os10g39930Os.46548.1.S1_at11/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39930Os.46548.2.S1_x_at9/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39932NANA10+21044574..21045131hypothetical protein
LOC_Os10g39934OsAffx.29376.1.S1_x_at1/1110+21049526..21050406hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26378.1.A1_at--304--7151Chr10:21028520..21028544 (25 bp)
GTCTCTCTAGGGTAAAACGGTGCAC
LOC_Os10g39910
Os.26378.1.A1_at--551--8871Chr10:21028562..21028583 (22 bp)
TGATGTCACTGGACCTTCAGGTACT
LOC_Os10g39910
Os.26378.1.A1_at--87--7851Chr10:21028669..21028693 (25 bp)
GGTACTAATTAATGGGCTGCTGCAC
LOC_Os10g39910
Os.26378.1.A1_at--758--4771Chr10:21028684..21028708 (25 bp)
GCTGCTGCACATTGTATCCGCAAAT
LOC_Os10g39910
Os.26378.1.A1_at--1152--191Chr10:21028931..21028955 (25 bp)
ATTTGCCAGAGACCGAGTATGTTCA
LOC_Os10g39910
Os.26378.1.A1_at--631--1191Chr10:21028946..21028970 (25 bp)
AGTATGTTCATTGGGCACGGTCTCA
LOC_Os10g39910
Os.26378.1.A1_at--913--5091Chr10:21028960..21029085 (25 bp)
GCACGGTCTCATCCAGAATACAGCA
LOC_Os10g39910
Os.26378.1.A1_at--666--7871Chr10:21029105..21029129 (25 bp)
GGTTAACCTGGTTGCGACTATGAAA
LOC_Os10g39910
Os.26378.1.A1_at--194--10411Chr10:21029207..21029231 (25 bp)
TTTTGTTTTCTTCAGCTGCATATAG
LOC_Os10g39910
Os.26378.1.A1_at--19--10031Chr10:21029229..21029253 (25 bp)
TAGAGCTGTTGTGTTTTGCTCCCTT
LOC_Os10g39910
Os.26378.1.A1_at--928--10731Chr10:21029353..21029377 (25 bp)
TTGAAGCGTCGATCTTTGTATCATA
LOC_Os10g39910
Target Sequence 
GTCTCTCTAGGGTAAAACGGTGCACAGATGAAGGACGGGCTTTGATGTCACTGGACCTTCAGGTACTAATTAATGGGCTG
CTGCACATTGTATCCGCAAATGTTAGGCCAAAGCTGCAAATTGTGGATACTTTCATAAAGGCTTATTATTTGCCAGAGAC
CGAGTATGTTCATTGGGCACGGTCTCATCCAGAATACAGCAAAAGTCAGGTTGTCGGGTTGGTTAACCTGGTTGCGACTA
TGAAAGGATGGAAACGGAAAACGAGGTTAGAAACCATCGAGAGGATTGAGGCAGGACCATAGGCGAAAACGGCTGTAATT
GTTTTTGTTTTCTTCAGCTGCATATAGAGCTGTTGTGTTTTGCTCCCTTATTTTTTTTCCTTTTCTTATTATTTCTTTTT
TTTCTTGTCGATTCTTTCACCTTTCGGCCCATTTTGAAGCTAACCCCATGATTCACCCTTGGTGTATATTGAAGCGTCGA
TCTTTGTATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26378.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis