Browse Element(s) Details


Os.46548.1.S1_at

Description gb:AK065689.1
DB_XREF= gi:32975707
TID=Os.46548.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 monooxygenase (OSJNBa0001O14.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039G17, full insert sequence.
FL= gb:AK065689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3993011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39900Os.22919.1.S1_at11/1110+21011214..21018389expressed protein
LOC_Os10g39910Os.26378.1.A1_at11/1110+21020287..21029467expressed protein
LOC_Os10g39920Os.37876.1.S1_at11/1110+21030374..21031359expressed protein
LOC_Os10g39930Os.46548.1.S1_at11/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39930Os.46548.2.S1_x_at9/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39932NANA10+21044574..21045131hypothetical protein
LOC_Os10g39934OsAffx.29376.1.S1_x_at1/1110+21049526..21050406hypothetical protein
LOC_Os10g39936NANA10+21057126..21057812Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39940OsAffx.20154.1.S1_at10/1110+21058544..21059714hypothetical protein
LOC_Os10g39940Os.13877.1.S1_at3/1110+21058544..21059714hypothetical protein
LOC_Os10g39950Os.23246.1.A1_at4/1110+21060140..21069846Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016117biological_processcarotenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009974molecular_functionepsilon hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46548.1.S1_at--533--4271Chr10:21043128..21043152 (25 bp)
CCTGTATATGAATGTAAGTCTGCGT
LOC_Os10g39930
Os.46548.1.S1_at--205--671Chr10:21043135..21043159 (25 bp)
ATGAATGTAAGTCTGCGTAAAGTTG
LOC_Os10g39930
Os.46548.1.S1_at--156--7171Chr10:21043145..21043169 (25 bp)
GTCTGCGTAAAGTTGACAGGGAACC
LOC_Os10g39930
Os.46548.1.S1_at--33--5651Chr10:21043159..21043183 (25 bp)
GACAGGGAACCTGATTTTGCACTCA
LOC_Os10g39930
Os.46548.1.S1_at--785--6531Chr10:21043171..21043327 (25 bp)
GATTTTGCACTCAGTGGGTCCAGAT
LOC_Os10g39930
Os.46548.1.S1_at--820--10271Chr10:21043174..21043330 (25 bp)
TTTGCACTCAGTGGGTCCAGATGAA
LOC_Os10g39930
Os.46548.1.S1_at--219--2011Chr10:21043313..21043335 (23 bp)
ACTCAGTGGGTCCAGATGAACGGAA
LOC_Os10g39930
Os.46548.1.S1_at--517--4351Chr10:21043322..21043346 (25 bp)
CCAGATGAACGGAAGGAAACAGCTT
LOC_Os10g39930
Os.46548.1.S1_at--600--2331Chr10:21043362..21043386 (25 bp)
AAAGATGTACATCGACACACATGAG
LOC_Os10g39930
Os.46548.1.S1_at--800--6271Chr10:21043365..21043389 (25 bp)
GATGTACATCGACACACATGAGATG
LOC_Os10g39930
Os.46548.1.S1_at--353--5631Chr10:21043375..21043399 (25 bp)
GACACACATGAGATGTAATCTACAA
LOC_Os10g39930
Target Sequence 
CCTGTATATGAATGTAAGTCTGCGTAAAGTTGACAGGGAACCTGATTTTGCACTCAGTGGGTCCAGATGAACGGAAGGAA
ACAGCTTCAAAGCAGAAAAGCAAAAGATGTACATCGACACACATGAGATGTAATCTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis