Browse Element(s) Details


Os.22919.1.S1_at

Description gb:CA759033
DB_XREF= gi:25803072
DB_XREF=BR060005B20E05.ab1
CLONE=BR060005B20E05.ab1
TID=Os.22919.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0001O14.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3990011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39860Os.32501.1.S1_a_at11/1110+20998536..21000958rhodanese, putative, expressed
LOC_Os10g39870Os.46896.1.S1_at10/1110+21001807..21002970cytochrome c biogenesis protein CcmE family, putative, expressed
LOC_Os10g39880Os.46404.1.S1_x_at7/1110+21004969..21006142Photosystem Q, putative
LOC_Os10g39890OsAffx.20155.1.S1_at10/1110+21008624..21009742Pollen proteins Ole e I family protein
LOC_Os10g39900Os.22919.1.S1_at11/1110+21011214..21018389expressed protein
LOC_Os10g39910Os.26378.1.A1_at11/1110+21020287..21029467expressed protein
LOC_Os10g39920Os.37876.1.S1_at11/1110+21030374..21031359expressed protein
LOC_Os10g39930Os.46548.1.S1_at11/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39930Os.46548.2.S1_x_at9/1110+21038699..21043415Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22919.1.S1_at--384--871Chr10:21017806..21017830 (25 bp)
ATGGCTGTGGCCACTGACTGGTCAG
LOC_Os10g39900
Os.22919.1.S1_at--1136--4471Chr10:21017839..21017863 (25 bp)
GCCTGGTATCGCTGACCGTGAGAGA
LOC_Os10g39900
Os.22919.1.S1_at--302--2511Chr10:21017987..21018011 (25 bp)
AACATCAGCTGTAGACTCAACCCAC
LOC_Os10g39900
Os.22919.1.S1_at--320--5851Chr10:21018014..21018038 (25 bp)
GACCATGTTTTGTCATACGGCAATC
LOC_Os10g39900
Os.22919.1.S1_at--188--531Chr10:21018036..21018060 (25 bp)
ATCGAACACATTATTGCAGCTGGAA
LOC_Os10g39900
Os.22919.1.S1_at--792--2671Chr10:21018067..21018091 (25 bp)
AAGCGCGAACGCAGCATTGTTGTGA
LOC_Os10g39900
Os.22919.1.S1_at--1162--2671Chr10:21018150..21018174 (25 bp)
AAGCTGGAAGCTGCCTGGACTGGAT
LOC_Os10g39900
Os.22919.1.S1_at--825--571Chr10:21018173..21018197 (25 bp)
ATCCATTCGGTTTTCCTTGTTCATA
LOC_Os10g39900
Os.22919.1.S1_at--221--3571Chr10:21018220..21018244 (25 bp)
CATAGTTCCACTGATTCGATTCTTT
LOC_Os10g39900
Os.22919.1.S1_at--50--9391Chr10:21018235..21018259 (25 bp)
TCGATTCTTTATTTGTCTTCCTCCA
LOC_Os10g39900
Os.22919.1.S1_at--402--7051Chr10:21018310..21018334 (25 bp)
GTAAAACCTGTAACTCACCATCATC
LOC_Os10g39900
Target Sequence 
ATGGCTGTGGCCACTGACTGGTCAGGTGTTCTGGCCTGGTATCGCTGACCGTGAGAGAGAGGAGAAATACATTAAGAAAT
TGGACAAAAAACTCAAGAACAAGGTGAAGTTGCTNGAAAGACAAAAGTCCGGTTACAAGCAGNAACCCCTTGGACAATGA
CAATCAGGAAGTCTTCTGATCAACATCAGCTGTAGACTCAACCCACCAGACCATGTTTTGTCATACGGCAATCGAACACA
TTATTGCAGCTGGAAGAGGTAAAGCGCGAACGCAGCATTGTTGTGAATNCGCATTGTTTCTCACCTCTTCGATCTCCCTC
TCATCTCCNAAGGAGAGNCTTGGTGAAGCTGGAAGCTGCCTGGACTGGATCCATTCGGTTTTCCTTGTTCATATAGTGGN
TATAAAATTATGTCACATAGTTCCACTGATTCGATTCTTTATTTGTCTTCCTCCACTGCCACGGCAGTGGCAGCTGCGAG
GGCAGCAGAATTTTGGTAGTCATATGTAAAACCTGTAACTCACCATCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis