Browse Element(s) Details


Os.46548.2.S1_x_at

Description gb:NM_197622.1
DB_XREF= gi:37536603
TID=Os.46548.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46548 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cytochrome P450 monooxygenase (OSJNBa0001O14.16), mRNA.
PROD=putative cytochrome P450 monooxygenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g399309/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39900Os.22919.1.S1_at11/1110+21011214..21018389expressed protein
LOC_Os10g39910Os.26378.1.A1_at11/1110+21020287..21029467expressed protein
LOC_Os10g39920Os.37876.1.S1_at11/1110+21030374..21031359expressed protein
LOC_Os10g39930Os.46548.1.S1_at11/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39930Os.46548.2.S1_x_at9/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39932NANA10+21044574..21045131hypothetical protein
LOC_Os10g39934OsAffx.29376.1.S1_x_at1/1110+21049526..21050406hypothetical protein
LOC_Os10g39936NANA10+21057126..21057812Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39940OsAffx.20154.1.S1_at10/1110+21058544..21059714hypothetical protein
LOC_Os10g39940Os.13877.1.S1_at3/1110+21058544..21059714hypothetical protein
LOC_Os10g39950Os.23246.1.A1_at4/1110+21060140..21069846Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016117biological_processcarotenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009974molecular_functionepsilon hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46548.2.S1_x_at--573--7851Chr10:21041501..21041525 (25 bp)
GGTAGACTCCCCAGATATGAAGATC
LOC_Os10g39930
Os.46548.2.S1_x_at--937--4751Chr10:21041533..21041557 (25 bp)
GCTGAAGTACTTGATGCGCTGTATA
LOC_Os10g39930
Os.46548.2.S1_x_at--619--2291Chr10:21041557..21041581 (25 bp)
AAATGAGTCTATGCGGCTTTATCCA
LOC_Os10g39930
Os.46548.2.S1_x_at--261--3371Chr10:21041586..21041680 (25 bp)
CACCTGTGTTGATACGGCGAGCCAT
LOC_Os10g39930
Os.46548.2.S1_x_at--215--291Chr10:21041679..21041703 (25 bp)
ATAGTTGATGATGTGCTTCCCGGAA
LOC_Os10g39930
Os.46548.2.S1_x_at--600--531Chr10:21042323..21042347 (25 bp)
ATCCCATTCAGTGGAGGTCCTCGGA
LOC_Os10g39930
Os.46548.2.S1_x_at--790--1271Chr10:21042358..21042382 (25 bp)
AGATCAGTTTGCTCTCTTGGAAGCA
LOC_Os10g39930
Os.46548.2.S1_x_at--397--8511Chr10:21042387..21042411 (25 bp)
TGGCACTTGCTGTTGTGTTGCAGAA
LOC_Os10g39930
Os.46548.2.S1_x_at--798--8511Chr10:21042414..21042438 (25 bp)
TGGACATTGAGCTTGTGCCAGATCA
LOC_Os10g39930
Os.46548.2.S1_x_at--425--491Chr10:21043467..21043491 (25 bp)
ATCGGCGTACAGGTTGACGAAGCTC
NONE
Os.46548.2.S1_x_at--982--9931Chr10:21043529..21043553 (25 bp)
TACGTTGTATGCTTATATATCCCCG
NONE
Target Sequence 
GGTAGACTCCCCAGATATGAAGATCTAAAAGAGCTGAAGTACTTGATGCGCTGTATAAATGAGTCTATGCGGCTTTATCC
ACACCCACCTGTGTTGATACGGCGAGCCATAGTTGATGATGTGCTTCCCGGAAACTATAAGATCAAAGCTGGTCAAGATA
TTATGATTTCAGTGTACAATATACACAGGTCACCTGAGGTTTGGGACAGAGCTGATGATTTTATTCCTGAGAGATTTGAT
TTAGAGGGACCTGTTCCAAATGAGACAAACACTGAATACAGATTTATCCCATTCAGTGGAGGTCCTCGGAAATGTGTTGG
AGATCAGTTTGCTCTCTTGGAAGCAATTGTGGCACTTGCTGTTGTGTTGCAGAAGATGGACATTGAGCTTGTGCCAGATC
AAAAAATTAACATGACTACTGGGGCCACAATTCATACAACCAATGGCCTGTATATGAATGTGGTAAATATCGGCGTACAG
GTTGACGAAGCTCGAAAGCATGGATATAATTCGTTTATTGTTTATGGATATACGTTGTATGCTTATATATCCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46548.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis