Browse Element(s) Details


Os.37876.1.S1_at

Description gb:AK069919.1
DB_XREF= gi:32979943
TID=Os.37876.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0001O14.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036J23, full insert sequence.
FL= gb:AK069919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3992011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39880Os.46404.1.S1_x_at7/1110+21004969..21006142Photosystem Q, putative
LOC_Os10g39890OsAffx.20155.1.S1_at10/1110+21008624..21009742Pollen proteins Ole e I family protein
LOC_Os10g39900Os.22919.1.S1_at11/1110+21011214..21018389expressed protein
LOC_Os10g39910Os.26378.1.A1_at11/1110+21020287..21029467expressed protein
LOC_Os10g39920Os.37876.1.S1_at11/1110+21030374..21031359expressed protein
LOC_Os10g39930Os.46548.1.S1_at11/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39930Os.46548.2.S1_x_at9/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39932NANA10+21044574..21045131hypothetical protein
LOC_Os10g39934OsAffx.29376.1.S1_x_at1/1110+21049526..21050406hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37876.1.S1_at--38--6151Chr10:21030932..21030956 (25 bp)
GAGGTCGAGGTGTTAAGCCTCCGCC
LOC_Os10g39920
Os.37876.1.S1_at--306--9991Chr10:21030787..21030811 (25 bp)
TAGCTCGCCGGAGTAGCACACGTGT
LOC_Os10g39920
Os.37876.1.S1_at--722--2171Chr10:21030770..21030794 (25 bp)
ACACGTGTGCGTGGATGGCCATAAG
LOC_Os10g39920
Os.37876.1.S1_at--141--10091Chr10:21030692..21030716 (25 bp)
TAGGATTTAGGCGTACTGGCGTTTT
LOC_Os10g39920
Os.37876.1.S1_at--799--8371Chr10:21030675..21030699 (25 bp)
GGCGTTTTTACTGCTGTACTTGCAC
LOC_Os10g39920
Os.37876.1.S1_at--1071--9051Chr10:21030639..21030663 (25 bp)
TGCTCAAATTATCTCCATGGCTAGT
LOC_Os10g39920
Os.37876.1.S1_at--880--8291Chr10:21030621..21030645 (25 bp)
GGCTAGTATAGCTGGTTGTACACTT
LOC_Os10g39920
Os.37876.1.S1_at--153--2051Chr10:21030600..21030624 (25 bp)
ACTTTGTACTATACCTGCCTAGCTA
LOC_Os10g39920
Os.37876.1.S1_at--188--7011Chr10:21030498..21030522 (25 bp)
GTACTCCTGGTACGTATTAGCAATC
LOC_Os10g39920
Os.37876.1.S1_at--343--4931Chr10:21030461..21030485 (25 bp)
GCTTGAATTTGCTTCCATGCATATA
LOC_Os10g39920
Os.37876.1.S1_at--424--851Chr10:21030437..21030461 (25 bp)
ATGGCAGTTGCAGTGCAGCCTGTGA
LOC_Os10g39920
Target Sequence 
GAGGTCGAGGTGTTAAGCCTCCGCCTCGAGGAGCTCGAGCGCCTCTTCTGGCGCCCTCCGCCGCCGCCGCCGACGACGCA
GCCGCAGCCGCAGCCGCAGCAGCCGCCGCAGAAGCGCCGGAGGGTGGCCAAGCTCGGCAGCTAGCTAGCTCGCCGGAGTA
GCACACGTGTGCGTGGATGGCCATAAGTGGTGTTGGTTGGGTTAGTTACTAGAGCTAAAGCTAGAGTAGTTCGGAGTTGG
TAGGATTTAGGCGTACTGGCGTTTTTACTGCTGTACTTGCACTATATTTCTACTGCTCAAATTATCTCCATGGCTAGTAT
AGCTGGTTGTACACTTTGTACTATACCTGCCTAGCTAAGGTTGCTACTACTACTACTGTAGCGTATCAGTGCAGTTTATA
CTAGTATCTGTGTATGTGATGGCATTGGGGGTGTGTACTCCTGGTACGTATTAGCAATCAATAGGAGCTTAGCTTGAATT
TGCTTCCATGCATATATGGCAGTTGCAGTGCAGCCTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis