Browse Element(s) Details


Os.14607.1.S1_at

Description gb:AK109533.1
DB_XREF= gi:32994742
TID=Os.14607.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1384D03.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-A02, full insert sequence.
FL= gb:AK109533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0176011/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01720OsAffx.12703.1.S1_at11/113+430744..437650hypothetical protein
LOC_Os03g01730Os.27807.2.S1_a_at11/113+443523..446205expressed protein
LOC_Os03g01740Os.27807.1.S1_a_at11/113+448680..449420expressed protein
LOC_Os03g01740Os.27807.1.S1_at11/113+448680..449420expressed protein
LOC_Os03g01750Os.8372.1.S1_at11/113+449799..455084protein tyrosine phosphatase, putative, expressed
LOC_Os03g01760Os.14607.1.S1_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.1.S1_x_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.2.S1_x_at5/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01770Os.24310.1.A1_a_at11/113+461280..463088rhodanese, putative, expressed
LOC_Os03g01780OsAffx.22272.1.S1_at11/113+463616..464817transposon protein, putative, unclassified
LOC_Os03g01790OsAffx.24937.1.S1_at11/113+466834..470785Zinc finger, C3HC4 type family protein
LOC_Os03g01800Os.18421.1.S1_a_at11/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800Os.46631.1.S1_x_at1/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810Os.47563.1.A1_at11/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01810Os.30537.2.S1_at6/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01820Os.30537.1.S1_at11/113+478264..480200Sterol desaturase family protein, expressed
LOC_Os03g01830Os.26376.2.S1_at10/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830Os.43898.1.S1_x_at9/113+484267..487525DEAD/DEAH box helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14607.1.S1_at--845--5231Chr03:459844..459868 (25 bp)
GAATCATGGAAGAGGTGAAGACCAC
LOC_Os03g01760
Os.14607.1.S1_at--51--7411Chr03:459909..459933 (25 bp)
GTGATCAGTCGCAGCTGTGACAACA
LOC_Os03g01760
Os.14607.1.S1_at--858--6431Chr03:459911..459935 (25 bp)
GATCAGTCGCAGCTGTGACAACAAT
LOC_Os03g01760
Os.14607.1.S1_at--198--7231Chr03:459916..459940 (25 bp)
GTCGCAGCTGTGACAACAATGACGT
LOC_Os03g01760
Os.14607.1.S1_at--352--3391Chr03:459920..459944 (25 bp)
CAGCTGTGACAACAATGACGTGCAG
LOC_Os03g01760
Os.14607.1.S1_at--485--4291Chr03:459955..459979 (25 bp)
CCACTCAACTGACAAAACAAATCAA
LOC_Os03g01760
Os.14607.1.S1_at--1133--5271Chr03:460102..460126 (25 bp)
GAATGTGCAATCAGAGAAGCGCATT
LOC_Os03g01760
Os.14607.1.S1_at--429--2671Chr03:460118..460142 (25 bp)
AAGCGCATTCTAGGCTAACAAGTTG
LOC_Os03g01760
Os.14607.1.S1_at--76--4591Chr03:460120..460144 (25 bp)
GCGCATTCTAGGCTAACAAGTTGGC
LOC_Os03g01760
Os.14607.1.S1_at--187--3971Chr03:460266..460290 (25 bp)
CGGATATGTTTGCAATGTTGTACTA
LOC_Os03g01760
Os.14607.1.S1_at--5--10131Chr03:460270..460294 (25 bp)
TATGTTTGCAATGTTGTACTATTGT
LOC_Os03g01760
Target Sequence 
GAATCATGGAAGAGGTGAAGACCACAGAGGGGAGGGATCTTTCCCTACTTGCTGAAATGTGGCATGTGATCAGTCGCAGC
TGTGACAACAATGACGTGCAGCTTGCACATGCCACTCAACTGACAAAACAAATCAATATTTGATCGACACCATCCATAGC
AAGGACCTTCTCCATGAGAAATTCAGAATGCCAGTTTCTCACATTCAATCATATTCTTGAATGGTGAACTGTGTAGTTGG
CAATTGACTAAGTAATTTGAATGTGCAATCAGAGAAGCGCATTCTAGGCTAACAAGTTGGCGAGCTCTGTGCAGGGAATT
AGTTTATTCTTTATTATTGGGAGAAATGTGAATCTCCTTTTTTTTTTTCTTGAGAGAGAGAGAGATTAAAATTGTGTTAT
AGAACGATGATCTGTGAAGGTCTTCGGATATGTTTGCAATGTTGTACTATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis