Browse Element(s) Details

Os.24310.1.A1_a_at

Description

gb:AK102520.1
DB_XREF= gi:32987729
TID=Os.24310.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1384D03.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095O09, full insert sequence.
FL= gb:AK102520.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g01770	11/11	rhodanese, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g01720	OsAffx.12703.1.S1_at	11/11	3	+	430744..437650	hypothetical protein
LOC_Os03g01730	Os.27807.2.S1_a_at	11/11	3	+	443523..446205	expressed protein
LOC_Os03g01740	Os.27807.1.S1_a_at	11/11	3	+	448680..449420	expressed protein
LOC_Os03g01740	Os.27807.1.S1_at	11/11	3	+	448680..449420	expressed protein
LOC_Os03g01750	Os.8372.1.S1_at	11/11	3	+	449799..455084	protein tyrosine phosphatase, putative, expressed
LOC_Os03g01760	Os.14607.1.S1_at	11/11	3	+	457622..460344	exostosin family protein, putative, expressed
LOC_Os03g01760	Os.14607.1.S1_x_at	11/11	3	+	457622..460344	exostosin family protein, putative, expressed
LOC_Os03g01760	Os.14607.2.S1_x_at	5/11	3	+	457622..460344	exostosin family protein, putative, expressed
LOC_Os03g01770	Os.24310.1.A1_a_at	11/11	3	+	461280..463088	rhodanese, putative, expressed
LOC_Os03g01780	OsAffx.22272.1.S1_at	11/11	3	+	463616..464817	transposon protein, putative, unclassified
LOC_Os03g01790	OsAffx.24937.1.S1_at	11/11	3	+	466834..470785	Zinc finger, C3HC4 type family protein
LOC_Os03g01800	Os.18421.1.S1_a_at	11/11	3	+	470997..472438	Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800	Os.46631.1.S1_x_at	1/11	3	+	470997..472438	Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810	Os.47563.1.A1_at	11/11	3	+	476111..477906	SNF7 family protein, expressed
LOC_Os03g01810	Os.30537.2.S1_at	6/11	3	+	476111..477906	SNF7 family protein, expressed
LOC_Os03g01820	Os.30537.1.S1_at	11/11	3	+	478264..480200	Sterol desaturase family protein, expressed
LOC_Os03g01830	Os.26376.2.S1_at	10/11	3	+	484267..487525	DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830	Os.43898.1.S1_x_at	9/11	3	+	484267..487525	DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01840	Os.26376.1.S1_at	11/11	3	+	487103..488659	transposon protein, putative, unclassified, expressed
LOC_Os03g01840	OsAffx.24307.1.S1_at	10/11	3	+	487103..488659	transposon protein, putative, unclassified, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0004725	molecular_function	protein tyrosine phosphatase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24310.1.A1_a_at--153--43	1	Chr03:462805..462829 (25 bp)	ATCATTACGCCAGCGACAGCTTCGG	LOC_Os03g01770
Os.24310.1.A1_a_at--454--755	1	Chr03:461668..461692 (25 bp)	GTGGCCCATCTTGTGCGCAAATGTA	LOC_Os03g01770
Os.24310.1.A1_a_at--1005--869	1	Chr03:461657..461681 (25 bp)	TGTGCGCAAATGTATCTGGACTATT	LOC_Os03g01770
Os.24310.1.A1_a_at--164--251	1	Chr03:461600..461624 (25 bp)	AACATCATGGTCCTTGAACGTGGAT	LOC_Os03g01770
Os.24310.1.A1_a_at--512--251	1	Chr03:461563..461587 (25 bp)	AACTTTCAGGGAGGCCTGTTTGCCG	LOC_Os03g01770
Os.24310.1.A1_a_at--362--489	1	Chr03:461423..461447 (25 bp)	GCTTTATGGTCACTACAGCACATTA	LOC_Os03g01770
Os.24310.1.A1_a_at--707--237	1	Chr03:461397..461421 (25 bp)	AAACCGTGTATCTCACTTTGGTGGA	LOC_Os03g01770
Os.24310.1.A1_a_at--1041--203	1	Chr03:461383..461407 (25 bp)	ACTTTGGTGGATCCGCAATTGTGCT	LOC_Os03g01770
Os.24310.1.A1_a_at--140--521	1	Chr03:461369..461393 (25 bp)	GCAATTGTGCTATTATGTGGCTCTA	LOC_Os03g01770
Os.24310.1.A1_a_at--1160--477	1	Chr03:461350..461374 (25 bp)	GCTCTATCAATTCAGTGGCCGTTAA	LOC_Os03g01770
Os.24310.1.A1_a_at--200--755	1	Chr03:461336..461360 (25 bp)	GTGGCCGTTAATGTCACTTCACGAC	LOC_Os03g01770

Target Sequence

ATCATTACGCCAGCGACAGCTTCGGGGAGCGGCTGCCGGAGCTGGCCCAGGCCACCAAGGGCAAGGAAACCCTCGTCTNC
CACTGTGCCCTCAGCAAGGTGCGTGGCCCATCTTGTGCGCAAATGTATCTGGACTATTTGTCAGAGGCTGATGAAGATTC
AGATGTAAAGAACATCATGGTCCTTGAACGTGGATTTAATGGATGGGAACTTTCAGGGAGGCCTGTTTGCCGCTGCAAGG
ACGCTCCTTGCAAGGGTGTGTGCTCTTGAGTATCCATATGAAACTATGCATTTACCTGTGCATTTCAAATTTGGTTGCTA
CCTGCAGACTTCAGGGNAGCCATTTATGCTTTATGGTCACTACAGCACATTAAAAACCGTGTATCTCACTTTGGTGGATC
CGCAATTGTGCTATTATGTGGCTCTATCAATTCAGTGGCCGTTAATGTCACTTCACGAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis