Browse Element(s) Details


Os.26376.1.S1_at

Description gb:AK105115.1
DB_XREF= gi:32990324
TID=Os.26376.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1384D03.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H07, full insert sequence.
FL= gb:AK105115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0184011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01770Os.24310.1.A1_a_at11/113+461280..463088rhodanese, putative, expressed
LOC_Os03g01780OsAffx.22272.1.S1_at11/113+463616..464817transposon protein, putative, unclassified
LOC_Os03g01790OsAffx.24937.1.S1_at11/113+466834..470785Zinc finger, C3HC4 type family protein
LOC_Os03g01800Os.18421.1.S1_a_at11/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800Os.46631.1.S1_x_at1/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810Os.47563.1.A1_at11/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01810Os.30537.2.S1_at6/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01820Os.30537.1.S1_at11/113+478264..480200Sterol desaturase family protein, expressed
LOC_Os03g01830Os.26376.2.S1_at10/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830Os.43898.1.S1_x_at9/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01840Os.26376.1.S1_at11/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01840OsAffx.24307.1.S1_at10/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01850Os.11723.4.S1_x_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.1.S1_s_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.2.S1_s_at8/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01860OsAffx.3109.1.S1_at11/113+497147..498140hypothetical protein
LOC_Os03g01870Os.34712.1.S1_at11/113+502353..503623NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26376.1.S1_at--939--1511Chr03:487430..487454 (25 bp)
AGCAGCTGCACCACTTGTGAGTTGG
LOC_Os03g01840
Os.26376.1.S1_at--952--3311Chr03:487419..487443 (25 bp)
CACTTGTGAGTTGGTCAGCGACTGA
LOC_Os03g01840
Os.26376.1.S1_at--667--7091Chr03:487406..487430 (25 bp)
GTCAGCGACTGAAATTTACTACTAC
LOC_Os03g01840
Os.26376.1.S1_at--364--10451Chr03:487391..487415 (25 bp)
TTACTACTACTAGCACTATGAATGT
LOC_Os03g01840
Os.26376.1.S1_at--874--6911Chr03:487364..487388 (25 bp)
GTATGAACCAATATGCATCACCATT
LOC_Os03g01840
Os.26376.1.S1_at--348--4971Chr03:487350..487374 (25 bp)
GCATCACCATTCTAAAACAGACAGA
LOC_Os03g01840
Os.26376.1.S1_at--102--5651Chr03:487327..487351 (25 bp)
GACAGATGCTAATTCACTCGATCAG
LOC_Os03g01840
Os.26376.1.S1_at--1130--8651Chr03:487298..487322 (25 bp)
TGTGTATGCATCAAAACCGGTTTCA
LOC_Os03g01840
Os.26376.1.S1_at--503--10291Chr03:487278..487302 (25 bp)
TTTCACAAACCCTATCTACATCAAT
LOC_Os03g01840
Os.26376.1.S1_at--814--10211Chr03:487254..487278 (25 bp)
TATTAGATGGTGCTATGTATGCTAG
LOC_Os03g01840
Os.26376.1.S1_at--387--8751Chr03:487239..487263 (25 bp)
TGTATGCTAGCACAAATTTGACCTG
LOC_Os03g01840
Target Sequence 
AGCAGCTGCACCACTTGTGAGTTGGTCAGCGACTGAAATTTACTACTACTAGCACTATGAATGTATGTATGAACCAATAT
GCATCACCATTCTAAAACAGACAGACAGATGCTAATTCACTCGATCAGCATATGTGTATGCATCAAAACCGGTTTCACAA
ACCCTATCTACATCAATATTAGATGGTGCTATGTATGCTAGCACAAATTTGACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis