Browse Element(s) Details

Os.11723.4.S1_x_at

Description

gb:CF327809
DB_XREF= gi:33803869
DB_XREF=NACL--02-H04.g1
CLONE=NACL--02-H04
TID=Os.11723.4
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.11723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 1 (OJ1384D03.15), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g01850	11/11	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680	10/11	Cell division control protein 2 homolog 1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g01780	OsAffx.22272.1.S1_at	11/11	3	+	463616..464817	transposon protein, putative, unclassified
LOC_Os03g01790	OsAffx.24937.1.S1_at	11/11	3	+	466834..470785	Zinc finger, C3HC4 type family protein
LOC_Os03g01800	Os.18421.1.S1_a_at	11/11	3	+	470997..472438	Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800	Os.46631.1.S1_x_at	1/11	3	+	470997..472438	Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810	Os.47563.1.A1_at	11/11	3	+	476111..477906	SNF7 family protein, expressed
LOC_Os03g01810	Os.30537.2.S1_at	6/11	3	+	476111..477906	SNF7 family protein, expressed
LOC_Os03g01820	Os.30537.1.S1_at	11/11	3	+	478264..480200	Sterol desaturase family protein, expressed
LOC_Os03g01830	Os.26376.2.S1_at	10/11	3	+	484267..487525	DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830	Os.43898.1.S1_x_at	9/11	3	+	484267..487525	DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01840	Os.26376.1.S1_at	11/11	3	+	487103..488659	transposon protein, putative, unclassified, expressed
LOC_Os03g01840	OsAffx.24307.1.S1_at	10/11	3	+	487103..488659	transposon protein, putative, unclassified, expressed
LOC_Os03g01850	Os.11723.4.S1_x_at	11/11	3	+	489816..493129	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850	Os.11723.1.S1_s_at	11/11	3	+	489816..493129	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850	Os.11723.2.S1_s_at	8/11	3	+	489816..493129	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01860	OsAffx.3109.1.S1_at	11/11	3	+	497147..498140	hypothetical protein
LOC_Os03g01870	Os.34712.1.S1_at	11/11	3	+	502353..503623	NAC-domain containing protein 21/22, putative, expressed
LOC_Os03g01880	Os.11789.1.S1_at	11/11	3	+	515957..521115	expressed protein
LOC_Os03g01880	OsAffx.12704.1.S1_at	11/11	3	+	515957..521115	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0000086	biological_process	G2/M transition of mitotic cell cycle
GO:0000087	biological_process	M phase of mitotic cell cycle
GO:0000910	biological_process	cytokinesis
GO:0007346	biological_process	regulation of progression through mitotic cell cycle
GO:0009826	biological_process	unidimensional cell growth
GO:0016572	biological_process	histone phosphorylation
GO:0042023	biological_process	DNA endoreduplication
GO:0000307	cellular_component	cyclin-dependent protein kinase holoenzyme complex
GO:0009574	cellular_component	preprophase band
GO:0010005	cellular_component	cortical microtubule (sensu Viridiplantae)
GO:0004693	molecular_function	cyclin-dependent protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11723.4.S1_x_at--604--137	2	Chr03:978665..978689 (25 bp)	AGAGCTCCAGAGATCCTTCTTGGAT	LOC_Os03g02680
Os.11723.4.S1_x_at--576--93	2	Chr03:978692..978716 (25 bp)	AGGCAGTATTCTACACCAGTTGATA	LOC_Os03g02680
Os.11723.4.S1_x_at--806--711	2	Chr03:978721..978745 (25 bp)	GTCAGTTGGTTGTATCTTTGCAGAA	LOC_Os03g02680
Os.11723.4.S1_x_at--975--733	2	Chr03:978749..978773 (25 bp)	GTGAACCAGAAACCACTGTTCCCTG	LOC_Os03g02680
Os.11723.4.S1_x_at--402--387	2	Chr03:978764..978788 (25 bp)	CTGTTCCCTGGTGATTCTGAGATTG	LOC_Os03g02680
Os.11723.4.S1_x_at--1077--803	2	Chr03:978941..978965 (25 bp)	GGAGTTAGCTCATTACCTGACTACA	LOC_Os03g02680
Os.11723.4.S1_x_at--304--893	2	Chr03:978958..978982 (25 bp)	TGACTACAAGTCTGCTTTCCCCAAG	LOC_Os03g02680
Os.11723.4.S1_x_at--457--987	2	Chr03:979108..979132 (25 bp)	TACTCTTGACCCTGCTGGTTTGGAC	LOC_Os03g02680
Os.11723.4.S1_x_at--862--1081	2	Chr03:979127..979242 (25 bp)	TTGGACCTTCTCTCTAAAATGCTTC	LOC_Os03g02680
Os.11723.4.S1_x_at--925--795	2	Chr03:979261..979285 (25 bp)	GGATCACAGCTAGACAGGCTCTTGA	LOC_Os03g02680
Os.11723.4.S1_x_at--880--959	1	Chr03:492980..493004 (25 bp)	TCATTCCTTGTGTGAACGCTGTGCC	LOC_Os03g01850

Target Sequence

AGAGCTCCAGAGATCCTTCTTGGATCAAGGCAGTATTCTACACCAGTTGATATGTGGTCAGTTGGTTGTATCTTTGCAGA
AATGGTGAACCAGAAACCACTGTTCCCTGGTGATTCTGAGATTGATGAATTATTTAAGATATTCAGGGTACTAGGAACTC
CAAATGAACAAAGTTGGCCAGGAGTTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAGGCACAGGCTCTT
GCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTAAAATGCTTCGGTACGAGCCAAACAAAAGGAT
CACAGCTAGACAGGCTCTTGAGCATGAGTACTTCAAGGACCTTGAGATGGNACNNTNACCCTGCTATGGCTTTACATTGA
ATTGGCTTATGTATGGGCTGGGCNGCTCATTTCATTCCTTGTGTGAACGCTGTGCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis