Browse Element(s) Details

Os.34712.1.S1_at

Description

gb:AK070416.1
DB_XREF= gi:32980440
TID=Os.34712.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative NAM (no apical meristem) protein (OJ1384D03.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051N16, full insert sequence.
FL= gb:AK070416.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g01870	11/11	NAC-domain containing protein 21/22, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g01810	Os.47563.1.A1_at	11/11	3	+	476111..477906	SNF7 family protein, expressed
LOC_Os03g01810	Os.30537.2.S1_at	6/11	3	+	476111..477906	SNF7 family protein, expressed
LOC_Os03g01820	Os.30537.1.S1_at	11/11	3	+	478264..480200	Sterol desaturase family protein, expressed
LOC_Os03g01830	Os.26376.2.S1_at	10/11	3	+	484267..487525	DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830	Os.43898.1.S1_x_at	9/11	3	+	484267..487525	DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01840	Os.26376.1.S1_at	11/11	3	+	487103..488659	transposon protein, putative, unclassified, expressed
LOC_Os03g01840	OsAffx.24307.1.S1_at	10/11	3	+	487103..488659	transposon protein, putative, unclassified, expressed
LOC_Os03g01850	Os.11723.4.S1_x_at	11/11	3	+	489816..493129	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850	Os.11723.1.S1_s_at	11/11	3	+	489816..493129	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850	Os.11723.2.S1_s_at	8/11	3	+	489816..493129	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01860	OsAffx.3109.1.S1_at	11/11	3	+	497147..498140	hypothetical protein
LOC_Os03g01870	Os.34712.1.S1_at	11/11	3	+	502353..503623	NAC-domain containing protein 21/22, putative, expressed
LOC_Os03g01880	Os.11789.1.S1_at	11/11	3	+	515957..521115	expressed protein
LOC_Os03g01880	OsAffx.12704.1.S1_at	11/11	3	+	515957..521115	expressed protein
LOC_Os03g01890	Os.22665.1.S2_at	11/11	3	+	528278..536231	rolled leaf1, putative, expressed
LOC_Os03g01890	Os.22665.1.S1_at	9/11	3	+	528278..536231	rolled leaf1, putative, expressed
LOC_Os03g01890	OsAffx.29480.3.S1_at	1/11	3	+	528278..536231	rolled leaf1, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0007275	biological_process	development
GO:0009734	biological_process	auxin mediated signaling pathway
GO:0045449	biological_process	regulation of transcription
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.34712.1.S1_at--137--149	1	Chr03:503184..503208 (25 bp)	AGCAATGGACAACCTCTAGCCACTT	LOC_Os03g01870
Os.34712.1.S1_at--904--751	1	Chr03:503232..503256 (25 bp)	GTGGAGTCACTCATCAGCTCACCTG	LOC_Os03g01870
Os.34712.1.S1_at--148--177	1	Chr03:503252..503276 (25 bp)	ACCTGCACCAACTATCATGAGCGAT	LOC_Os03g01870
Os.34712.1.S1_at--375--69	1	Chr03:503268..503292 (25 bp)	ATGAGCGATCACGATCGGCTCTTCA	LOC_Os03g01870
Os.34712.1.S1_at--184--593	1	Chr03:503325..503349 (25 bp)	GAGCAGTACTTTTTCTTAGATGACG	LOC_Os03g01870
Os.34712.1.S1_at--419--477	1	Chr03:503369..503393 (25 bp)	GCTGCTAGATCTTTCAGTGCTCCAA	LOC_Os03g01870
Os.34712.1.S1_at--283--263	1	Chr03:503399..503423 (25 bp)	AACCTCGTTCGAGTCTGAGCAAGCT	LOC_Os03g01870
Os.34712.1.S1_at--397--891	1	Chr03:503414..503438 (25 bp)	TGAGCAAGCTCCAGGCCACGGTGGC	LOC_Os03g01870
Os.34712.1.S1_at--318--601	1	Chr03:503463..503487 (25 bp)	GAGAGCTTCGACACGACCTGTGCTG	LOC_Os03g01870
Os.34712.1.S1_at--343--277	1	Chr03:503494..503518 (25 bp)	AAGACGCGAGCGATTACTGCATGCA	LOC_Os03g01870
Os.34712.1.S1_at--713--489	1	Chr03:503599..503623 (25 bp)	GCTTAATTAATTGCGCACTTGGCTT	LOC_Os03g01870

Target Sequence

AGCAATGGACAACCTCTAGCCACTTCTTCGCCACCTGCTCATCACCTGGTGGAGTCACTCATCAGCTCACCTGCACCAAC
TATCATGAGCGATCACGATCGGCTCTTCACCATCCAGCTGCCGCATCACCAACATTGTGATGAGCAGTACTTTTTCTTAG
ATGACGATGAACAGCACCAGCAGCAGCTGCTAGATCTTTCAGTGCTCCAAGCTCCAACCTCGTTCGAGTCTGAGCAAGCT
CCAGGCCACGGTGGCATGGAGATTAATATCGCAGAGATGGAGAGCTTCGACACGACCTGTGCTGCGCTGCAAGACGCGAG
CGATTACTGCATGCAGCTCTATTAATTAATTCAATGGATGGATGAATCACACGTATATATACGCATAGCCTTAAATTAAT
TAATGTGTATCATCAGCTTAATTAATTGCGCACTTGGCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis