Browse Element(s) Details


Os.22665.1.S2_at

Description gb:AY425991.1
DB_XREF= gi:37813099
TID=Os.22665.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox10 mRNA, complete cds.
FL= gb:AY425991.1 gb:AK059498.1 gb:AK110678.1 gb:AK102378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0189011/11rolled leaf1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01870Os.34712.1.S1_at11/113+502353..503623NAC-domain containing protein 21/22, putative, expressed
LOC_Os03g01880Os.11789.1.S1_at11/113+515957..521115expressed protein
LOC_Os03g01880OsAffx.12704.1.S1_at11/113+515957..521115expressed protein
LOC_Os03g01890Os.22665.1.S2_at11/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890Os.22665.1.S1_at9/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890OsAffx.29480.3.S1_at1/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01900OsAffx.12705.1.S1_at11/113+537574..53820140S ribosomal protein S17, putative, expressed
LOC_Os03g01910Os.12834.1.S1_a_at10/113+538710..541030Transcription factor BTF3, putative, expressed
LOC_Os03g01920Os.15287.1.S1_at11/113+546322..549191expressed protein
LOC_Os03g01920Os.52840.1.S1_at11/113+546322..549191expressed protein
LOC_Os03g01930Os.52274.1.S1_at8/113+549787..552201retrotransposon protein, putative, unclassified
LOC_Os03g01940Os.7327.4.S1_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.1.S2_a_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.2.S1_x_at11/113+552563..558928expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0009733biological_processresponse to auxin stimulus
GO:0009855biological_processdetermination of bilateral symmetry
GO:0009887biological_processorgan morphogenesis
GO:0009943biological_processadaxial/abaxial axis specification
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009955biological_processadaxial/abaxial pattern formation
GO:0009956biological_processradial pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010014biological_processmeristem initiation
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010073biological_processmeristem maintenance
GO:0010075biological_processregulation of meristem size
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0010089biological_processxylem histogenesis
GO:0030154biological_processcell differentiation
GO:0045597biological_processpositive regulation of cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22665.1.S2_at--121--8531Chr03:535528..535552 (25 bp)
TGGACATGCTAGAAACTTCCCTTGT
LOC_Os03g01890
Os.22665.1.S2_at--651--8091Chr03:535562..535586 (25 bp)
GGACCTCACATTGGACAGGATCTTT
LOC_Os03g01890
Os.22665.1.S2_at--860--4431Chr03:535777..535801 (25 bp)
GCCATCAGGCGTGTGCATGTCAGGA
LOC_Os03g01890
Os.22665.1.S2_at--1035--2931Chr03:535801..535825 (25 bp)
AATGGGTCGGCATGTTTCTTTCGAT
LOC_Os03g01890
Os.22665.1.S2_at--354--9631Chr03:535825..535849 (25 bp)
TCAGGCCGTGGCTTGGAAAGTGCTT
LOC_Os03g01890
Os.22665.1.S2_at--502--7951Chr03:535855..535879 (25 bp)
GGATAGCAATGTTCACTGCCTGGCC
LOC_Os03g01890
Os.22665.1.S2_at--744--5731Chr03:535957..535981 (25 bp)
GACTGTTTTGCACTAGATCTAGACC
LOC_Os03g01890
Os.22665.1.S2_at--809--7031Chr03:536019..536043 (25 bp)
GTAAATGTAATCTCGCTCCCATTCC
LOC_Os03g01890
Os.22665.1.S2_at--739--5931Chr03:536099..536123 (25 bp)
GAGCAATCCTGACGGTTGGGTACTT
LOC_Os03g01890
Os.22665.1.S2_at--798--2191Chr03:536144..536168 (25 bp)
AAATCGGATCCTGTAGGGCGTCGAA
LOC_Os03g01890
Os.22665.1.S2_at--934--10071Chr03:536157..536181 (25 bp)
TAGGGCGTCGAAAACTGCATTGGCA
LOC_Os03g01890
Target Sequence 
TGGACATGCTAGAAACTTCCCTTGTCGCCTTACAGGACCTCACATTGGACAGGATCTTTGATGAGCCTGGAAAAGAAGCA
TTGTTCTCAAACATTCCCAAATTGATGGAGCAGGGCCATGTCTACCTGCCATCAGGCGTGTGCATGTCAGGAATGGGTCG
GCATGTTTCTTTCGATCAGGCCGTGGCTTGGAAAGTGCTTGCCGAGGATAGCAATGTTCACTGCCTGGCCTTCTGTTTCG
TCAACTGGTCCTTTGTGTGACCATCCCACATCCACTGCGAAGTGAAGATTCATTTTTGCTTGTTCAAGACTGTTTTGCAC
TAGATCTAGACCTGAGAATCTAGTAGTATTTGCGAAATTTCTCGCTTATGTAAATGTAATCTCGCTCCCATTCCATCAAG
TACCCAAGTACAAGGCAGTGGCCAAGTGGTTTTAGTTGTAGGGGGATCGGAGCAATCCTGACGGTTGGGTACTTGGGTTC
CTTCCAGCAATGTAAAATCGGATCCTGTAGGGCGTCGAAAACTGCATTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22665.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis