Browse Element(s) Details


Os.52840.1.S1_at

Description gb:AK069551.1
DB_XREF= gi:32979575
TID=Os.52840.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025O15, full insert sequence.
FL= gb:AK069551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0192011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01890Os.22665.1.S2_at11/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890Os.22665.1.S1_at9/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890OsAffx.29480.3.S1_at1/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01900OsAffx.12705.1.S1_at11/113+537574..53820140S ribosomal protein S17, putative, expressed
LOC_Os03g01910Os.12834.1.S1_a_at10/113+538710..541030Transcription factor BTF3, putative, expressed
LOC_Os03g01920Os.15287.1.S1_at11/113+546322..549191expressed protein
LOC_Os03g01920Os.52840.1.S1_at11/113+546322..549191expressed protein
LOC_Os03g01930Os.52274.1.S1_at8/113+549787..552201retrotransposon protein, putative, unclassified
LOC_Os03g01940Os.7327.4.S1_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.1.S2_a_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.2.S1_x_at11/113+552563..558928expressed protein
LOC_Os03g01950OsAffx.25962.1.S1_at11/113+570644..576389transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52840.1.S1_at--1139--3111Chr03:547388..547412 (25 bp)
AATTTGTTCTCAGGCAATTCTACAT
LOC_Os03g01920
Os.52840.1.S1_at--636--3151Chr03:547373..547397 (25 bp)
AATTCTACATTGTCTGGCCATTCCA
LOC_Os03g01920
Os.52840.1.S1_at--420--9131Chr03:547347..547371 (25 bp)
TGCGAGCACCTGCTGTAAACCTGGT
LOC_Os03g01920
Os.52840.1.S1_at--703--2371Chr03:547331..547355 (25 bp)
AAACCTGGTCTTGCATGTCTTTAGT
LOC_Os03g01920
Os.52840.1.S1_at--34--5731Chr03:547294..547318 (25 bp)
GACTGACAAGTCTTTGCGCAAAATG
LOC_Os03g01920
Os.52840.1.S1_at--117--5151Chr03:547277..547301 (25 bp)
GCAAAATGTCGATGCACACCATGTA
LOC_Os03g01920
Os.52840.1.S1_at--823--5951Chr03:547230..547254 (25 bp)
GAGCAATCTTTATGTATGGCGTCAA
LOC_Os03g01920
Os.52840.1.S1_at--382--31Chr03:547146..547170 (25 bp)
ATTGTGGTGCCATCAGTATCAACTG
LOC_Os03g01920
Os.52840.1.S1_at--480--1191Chr03:547132..547156 (25 bp)
AGTATCAACTGGGTAGCACTTTATA
LOC_Os03g01920
Os.52840.1.S1_at--709--10171Chr03:547062..547086 (25 bp)
TATACTCCGTAGTGTAATGCGCATA
LOC_Os03g01920
Os.52840.1.S1_at--114--3511Chr03:546993..547017 (25 bp)
GAGTTGGGCGTACAACCGAAGCCAA
LOC_Os03g01920
Target Sequence 
AATTTGTTCTCAGGCAATTCTACATTGTCTGGCCATTCCACTGCGAGCACCTGCTGTAAACCTGGTCTTGCATGTCTTTA
GTTATGGTTGCTTAGACTGACAAGTCTTTGCGCAAAATGTCGATGCACACCATGTAATTTTGATGAGATTTCTCTATTGA
GCAATCTTTATGTATGGCGTCAAATTCAGAAGTCCGGAAAGTTTTCTAACATTATAAACCAGAAGAGGGCTACTTTATGG
TAATTGTGGTGCCATCAGTATCAACTGGGTAGCACTTTATACAAGGGTCTTTTTTTTTTTTGAGAAAACAAGGGTATGGA
TTTAGTATATACTCCGTAGTGTAATGCGCATAAAAAGCCTATCTTGTTAATTTTCCTTGTTGCAATGTTGTTTCAAGAGT
TGGGCGTACAACCGAAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis