Browse Element(s) Details


Os.12834.1.S1_a_at

Description gb:AK121478.1
DB_XREF= gi:37991101
TID=Os.12834.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20946 putative transcription factor BTF3 mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149H07, full insert sequence.
FL= gb:AK121478.1 gb:AY224525.1 gb:AK061661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0191010/11Transcription factor BTF3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01880Os.11789.1.S1_at11/113+515957..521115expressed protein
LOC_Os03g01880OsAffx.12704.1.S1_at11/113+515957..521115expressed protein
LOC_Os03g01890Os.22665.1.S2_at11/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890Os.22665.1.S1_at9/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890OsAffx.29480.3.S1_at1/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01900OsAffx.12705.1.S1_at11/113+537574..53820140S ribosomal protein S17, putative, expressed
LOC_Os03g01910Os.12834.1.S1_a_at10/113+538710..541030Transcription factor BTF3, putative, expressed
LOC_Os03g01920Os.15287.1.S1_at11/113+546322..549191expressed protein
LOC_Os03g01920Os.52840.1.S1_at11/113+546322..549191expressed protein
LOC_Os03g01930Os.52274.1.S1_at8/113+549787..552201retrotransposon protein, putative, unclassified
LOC_Os03g01940Os.7327.4.S1_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.1.S2_a_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.2.S1_x_at11/113+552563..558928expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12834.1.S1_a_at--739--2471Chr03:539772..539796 (25 bp)
AACATTCCTGGTATCGAAGAGGTCA
LOC_Os03g01910
Os.12834.1.S1_a_at--113--6271Chr03:539733..539757 (25 bp)
GATGTGGTTATCCAATTTCAGAATC
LOC_Os03g01910
Os.12834.1.S1_a_at--722--2111Chr03:539588..539612 (25 bp)
ACATGGGTAGTGAGTGGAACACCAC
LOC_Os03g01910
Os.12834.1.S1_a_at--1068--9011Chr03:539317..539341 (25 bp)
TGCAAGATCTGCTTCCAACAATCAT
LOC_Os03g01910
Os.12834.1.S1_a_at--611--3231Chr03:539130..539316 (25 bp)
CAACCAGTTGGGACCTGATAACCTG
LOC_Os03g01910
Os.12834.1.S1_a_at--1123--8071Chr03:539120..539144 (25 bp)
GGACCTGATAACCTGGACAACCTCA
LOC_Os03g01910
Os.12834.1.S1_a_at--853--2771Chr03:538918..538942 (25 bp)
AAGAGTCGTCCTAGTTTTGTTCATC
LOC_Os03g01910
Os.12834.1.S1_a_at--257--9171Chr03:538839..538863 (25 bp)
TGCCTGGGACGTGCTCTCCTATGGA
LOC_Os03g01910
Os.12834.1.S1_a_at--604--10811Chr03:538760..538784 (25 bp)
TTGGTCCAATCCAACGGTGGAATTG
LOC_Os03g01910
Os.12834.1.S1_a_at--205--6771Chr03:538723..538747 (25 bp)
GTTAAATTATGCTTCCAATTCGCAA
LOC_Os03g01910
Os.12834.1.S1_a_at--875--4291Chr03:538709..538733 (25 bp)
CCAATTCGCAAATGTTTTATACCCA
NONE
Target Sequence 
AACATTCCTGGTATCGAAGAGGTCAATATCTTCAAGGATGATGTGGTTATCCAATTTCAGAATCCNAAAGTGCAAGCATC
NATTGGTGCAAATACATGGGTAGTGAGTGGAACACCACAGACGAAGAAGNTGCAAGATCTGCTTCCAACAATCATCAACC
AGTTGGGACCTGATAACCTGGACAACCTCAGGAGGCTTGCTGAGCAGTTCCAGAAGCAGGTACCCGGTGCTGAGGCTGGT
GCCAGCGCAGGTAACGCTCAGGACGACGACGATGATGTCCCTGAGCTTGTCCCTGGAGAGACGTTCGAGGAGGCTGCAGA
GGAGAAGGAGCCTGAGGAGAAGAAGGAAGCGGAGGTGGAAGAGAAGAAAGAGTCGTCCTAGTTTTGTTCATCGCCGTCGT
CTATTATTGTTGTGAAGGGTTGTTGGTTCAATGTTACCCCCTACCATGCCTGGGACGTGCTCTCCTATGGACTCCGACCT
GCCTTACTCGTTTCCATGTGGGCCGGTTTTGTCTTGTACGAGGATTTGGTCCAATCCAACGGTGGAATTGAGTTTTACGA
CAGTTAAATTATGCTTCCAATTCGCAAATGTTTTATACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12834.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis