Browse Element(s) Details


OsAffx.12704.1.S1_at

Description tigr:9631.m00092
TID=OsAffx.12704.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lysine decarboxylase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0188011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01850Os.11723.4.S1_x_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.1.S1_s_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.2.S1_s_at8/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01860OsAffx.3109.1.S1_at11/113+497147..498140hypothetical protein
LOC_Os03g01870Os.34712.1.S1_at11/113+502353..503623NAC-domain containing protein 21/22, putative, expressed
LOC_Os03g01880Os.11789.1.S1_at11/113+515957..521115expressed protein
LOC_Os03g01880OsAffx.12704.1.S1_at11/113+515957..521115expressed protein
LOC_Os03g01890Os.22665.1.S2_at11/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890Os.22665.1.S1_at9/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890OsAffx.29480.3.S1_at1/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01900OsAffx.12705.1.S1_at11/113+537574..53820140S ribosomal protein S17, putative, expressed
LOC_Os03g01910Os.12834.1.S1_a_at10/113+538710..541030Transcription factor BTF3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12704.1.S1_at--117--3571Chr03:519161..519185 (25 bp)
CATAGCCCTGCATTTCATAACTGTG
LOC_Os03g01880
OsAffx.12704.1.S1_at--68--4951Chr03:519190..519214 (25 bp)
GCATTCCATTTCTCAATTTTGTCAG
LOC_Os03g01880
OsAffx.12704.1.S1_at--355--171Chr03:519205..519229 (25 bp)
ATTTTGTCAGGTCAAGGCGCCAGCA
LOC_Os03g01880
OsAffx.12704.1.S1_at--604--1911Chr03:519238..519262 (25 bp)
ACGGCTAGTACTGCCTCTTAAGAGC
LOC_Os03g01880
OsAffx.12704.1.S1_at--1023--6752Chr03:519292..519316 (25 bp)
GTTAATTCCATCCAACTCAGCTAGT
LOC_Os03g01880
OsAffx.12704.1.S1_at--380--1572Chr03:519310..519334 (25 bp)
AGCTAGTAACTCTTTTTGCACCTTG
LOC_Os03g01880
OsAffx.12704.1.S1_at--304--3071Chr03:519342..519366 (25 bp)
AATAAGTGACCTGCAACGCTGGGCC
LOC_Os03g01880
OsAffx.12704.1.S1_at--1035--2193Chr04:15688518..15688541 (24 bp)
AAATAACTTAAGCTTCCTCTCACAC
NONE
OsAffx.12704.1.S1_at--670--10331Chr03:519443..519467 (25 bp)
TTTCACCATTTTTCTCTCGAAGCTG
LOC_Os03g01880
OsAffx.12704.1.S1_at--179--1974Chr04:15688659..15688683 (25 bp)
ACTGTAGCTGACGTGTTTCTCCTAT
NONE
OsAffx.12704.1.S1_at--87--7011Chr03:519577..519601 (25 bp)
GTACTGTTGTACTCGCTCTAATAAA
LOC_Os03g01880
Target Sequence 
CATAGCCCTGCATTTCATAACTGTGCATTGCATTCCATTTCTCAATTTTGTCAGGTCAAGGCGCCAGCAAGATCTCCACG
GCTAGTACTGCCTCTTAAGAGCAAGGTTAATAGTAGTTGTAGGCAGCCGGCGTTAATTCCATCCAACTCAGCTAGTAACT
CTTTTTGCACCTTGTGAATACAATAAGTGACCTGCAACGCTGGGCCCATCAACTTCACATCATAATAAAATAACTTAAGC
TTCCTCTCACACATGCAGCTCACAACCTTTGCGCTCACCACTTTTCACCATTTTTCTCTCGAAGCTGGTGCTAGAGCCAG
CGATAAAATTGTCGCCCACTCTCACTCTCTCTCCTCTTCTCACTCATCCAGCTCAACACTGTAGCTGACGTGTTTCTCCT
ATCGCCAGTCCAGCTTGTACTGTTGTACTCGCTCTAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis