Browse Element(s) Details


OsAffx.12705.1.S1_at

Description tigr:9631.m00095
TID=OsAffx.12705.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal S17
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0190011/1140S ribosomal protein S17, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01880Os.11789.1.S1_at11/113+515957..521115expressed protein
LOC_Os03g01880OsAffx.12704.1.S1_at11/113+515957..521115expressed protein
LOC_Os03g01890Os.22665.1.S2_at11/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890Os.22665.1.S1_at9/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890OsAffx.29480.3.S1_at1/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01900OsAffx.12705.1.S1_at11/113+537574..53820140S ribosomal protein S17, putative, expressed
LOC_Os03g01910Os.12834.1.S1_a_at10/113+538710..541030Transcription factor BTF3, putative, expressed
LOC_Os03g01920Os.15287.1.S1_at11/113+546322..549191expressed protein
LOC_Os03g01920Os.52840.1.S1_at11/113+546322..549191expressed protein
LOC_Os03g01930Os.52274.1.S1_at8/113+549787..552201retrotransposon protein, putative, unclassified
LOC_Os03g01940Os.7327.4.S1_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.1.S2_a_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.2.S1_x_at11/113+552563..558928expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12705.1.S1_at--80--7551Chr03:538136..538160 (25 bp)
GGGCGCGTGCGCACGAAGACGGTGA
LOC_Os03g01900
OsAffx.12705.1.S1_at--982--5371Chr03:538113..538137 (25 bp)
GAAGAAGACGTCTCGGCAGGTGATC
LOC_Os03g01900
OsAffx.12705.1.S1_at--1036--4591Chr03:537718..537742 (25 bp)
GCGACCGCGCCTAGGTGATCGCTTC
LOC_Os03g01900
OsAffx.12705.1.S1_at--845--3791Chr03:537688..537712 (25 bp)
CTCCTCGTAATCACTCGCGGACAAA
LOC_Os03g01900
OsAffx.12705.1.S1_at--798--9751Chr03:537681..537705 (25 bp)
TAATCACTCGCGGACAAACACAAGC
LOC_Os03g01900
OsAffx.12705.1.S1_at--1148--2171Chr03:537664..537688 (25 bp)
ACACAAGCAATTTTATGTTTTGATT
LOC_Os03g01900
OsAffx.12705.1.S1_at--124--10771Chr03:537645..537669 (25 bp)
TTGATTGCAGTTTTGTAATACCTCA
LOC_Os03g01900
OsAffx.12705.1.S1_at--305--10811Chr03:537633..537657 (25 bp)
TTGTAATACCTCAAAGATTCGAAGA
LOC_Os03g01900
OsAffx.12705.1.S1_at--462--6571Chr03:537618..537642 (25 bp)
GATTCGAAGAACCACCGGATATCAT
LOC_Os03g01900
OsAffx.12705.1.S1_at--53--5431Chr03:537610..537634 (25 bp)
GAACCACCGGATATCATATTTTCTT
LOC_Os03g01900
OsAffx.12705.1.S1_at--547--3351Chr03:537606..537630 (25 bp)
CACCGGATATCATATTTTCTTGATT
LOC_Os03g01900
Target Sequence 
GGGCGCGTGCGCACGAAGACGGTGAAGAAGACGTCTCGGCAGGTGATCGAGAAGTACTACTCGCGGATGACCCTGGACTT
CCACACGAACAAGAAGGTGCTGGAGGAGGTGTCGATCCTGCCGTCGAAGCGCCTCCGCAACAAGGTGGCCGGCTTCAGCA
CCCACCTGATGCGCCGCATCCAGCGCGGCCCCGTCCGCGGCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGC
ATGGACTTCGTCCCGGACAGGTCGGCGCTCGAGGTCGACGACATCCGCGTCGACAAGGAGACCCTCGACATGCTCACCTC
CCTCGGCATGGCCGACCTCCCCGGCGTCGTGCGCCAGCCCGACGCCTCCACCTCCGCCCCGCAGCAGTACGGCGCCGCCC
GCCTCCCCTACGCCCGCCGCGACCGCGCCTAGGTGATCGCTTCGCCTCCTCCTCGTAATCACTCGCGGACAAACACAAGC
AATTTTATGTTTTGATTGCAGTTTTGTAATACCTCAAAGATTCGAAGAACCACCGGATATCATATTTTCTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis