Browse Element(s) Details


Os.7327.1.S2_a_at

Description gb:AK120099.1
DB_XREF= gi:37989722
TID=Os.7327.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022F17, full insert sequence.
FL= gb:AK099349.1 gb:AK120099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0194011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01890Os.22665.1.S2_at11/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890Os.22665.1.S1_at9/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890OsAffx.29480.3.S1_at1/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01900OsAffx.12705.1.S1_at11/113+537574..53820140S ribosomal protein S17, putative, expressed
LOC_Os03g01910Os.12834.1.S1_a_at10/113+538710..541030Transcription factor BTF3, putative, expressed
LOC_Os03g01920Os.15287.1.S1_at11/113+546322..549191expressed protein
LOC_Os03g01920Os.52840.1.S1_at11/113+546322..549191expressed protein
LOC_Os03g01930Os.52274.1.S1_at8/113+549787..552201retrotransposon protein, putative, unclassified
LOC_Os03g01940Os.7327.4.S1_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.1.S2_a_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.2.S1_x_at11/113+552563..558928expressed protein
LOC_Os03g01950OsAffx.25962.1.S1_at11/113+570644..576389transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g01960Os.6668.1.S1_at11/113+577265..578305expressed protein
LOC_Os03g01970Os.7734.2.S1_x_at11/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01970Os.7734.1.S1_at11/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01970Os.54579.1.S1_at1/113+580852..587675THO complex subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7327.1.S2_a_at--578--9852Chr10:15831418..15831442 (25 bp)
TACACCTACACGCAATTTGCATGTT
NONE
Os.7327.1.S2_a_at--1092--5193Chr10:20930385..20930601 (25 bp)
GCAATTTGCATGTTTCTTTTCTACA
NONE
Os.7327.1.S2_a_at--673--3672Chr10:15831392..15831416 (25 bp)
CTTTTCTACAAAGCAACCCACGTTG
NONE
Os.7327.1.S2_a_at--605--2612Chr10:15831378..15831402 (25 bp)
AACCCACGTTGCACTGACAGTTGAT
NONE
Os.7327.1.S2_a_at--354--3352Chr10:15831374..15831398 (25 bp)
CACGTTGCACTGACAGTTGATGTTC
NONE
Os.7327.1.S2_a_at--7--9212Chr10:15831252..15831276 (25 bp)
TGCCACTATATCTATACTGATAGCC
NONE
Os.7327.1.S2_a_at--427--252Chr10:15831245..15831269 (25 bp)
ATATCTATACTGATAGCCACTCTAT
NONE
Os.7327.1.S2_a_at--1069--3312Chr10:15831214..15831238 (25 bp)
CACTTAATGTGGCTCGTATGTTTCA
NONE
Os.7327.1.S2_a_at--1154--7532Chr10:15831206..15831230 (25 bp)
GTGGCTCGTATGTTTCATGTAAATT
NONE
Os.7327.1.S2_a_at--562--10192Chr10:15831169..15831193 (25 bp)
TATATGTATGTCTGCTGCTAAAAAA
NONE
Os.7327.1.S2_a_at--159--7292Chr10:15831121..15831145 (25 bp)
GTGCCTGGTTAGCAATGTCATCTAT
NONE
Target Sequence 
TACACCTACACGCAATTTGCATGTTTCTTTTCTACAAAGCAACCCACGTTGCACTGACAGTTGATGTTCTGTGAAAAACA
GCTGTTCACCTTGTCCTACAGATATCATTTTGCTATCGCTGAACTATAGGCTTGAGATATTATCCATGTAAAACTCTTGC
CTAACATGCCACTATATCTATACTGATAGCCACTCTATCATAGACACTTAATGTGGCTCGTATGTTTCATGTAAATTTAA
GCTAGCATCTATATGTATGTCTGCTGCTAAAAAAAAAAACTAAACAGCCANNNNNNNGTGCCTGGTTAGCAATGTCATCT
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7327.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis