Browse Element(s) Details


Os.6668.1.S1_at

Description gb:AK106206.1
DB_XREF= gi:32991415
TID=Os.6668.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6668 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G02, full insert sequence.
FL= gb:AK066190.1 gb:AK066769.1 gb:AK106206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0196011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01940Os.7327.4.S1_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.1.S2_a_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.2.S1_x_at11/113+552563..558928expressed protein
LOC_Os03g01950OsAffx.25962.1.S1_at11/113+570644..576389transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g01960Os.6668.1.S1_at11/113+577265..578305expressed protein
LOC_Os03g01970Os.7734.2.S1_x_at11/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01970Os.7734.1.S1_at11/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01970Os.54579.1.S1_at1/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01980Os.49574.1.S1_at11/113+588226..592776kinase interacting protein, putative, expressed
LOC_Os03g01990NANA3+599568..601964LysM domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6668.1.S1_at--464--1471Chr03:577788..577812 (25 bp)
AGAAGGCCGGATACGTCATCATCCA
LOC_Os03g01960
Os.6668.1.S1_at--923--8211Chr03:577853..577877 (25 bp)
GGAATTGGGCTATCTCGCCGATGGC
LOC_Os03g01960
Os.6668.1.S1_at--1140--3791Chr03:577866..577890 (25 bp)
CTCGCCGATGGCCAATTTAAGAATT
LOC_Os03g01960
Os.6668.1.S1_at--553--271Chr03:577946..577970 (25 bp)
ATATGTGTTGCGTCTGTCTGACTCA
LOC_Os03g01960
Os.6668.1.S1_at--967--3091Chr03:578007..578031 (25 bp)
AATACGGTCTTGATGTTTTCTTACA
LOC_Os03g01960
Os.6668.1.S1_at--956--10191Chr03:578086..578110 (25 bp)
TATTTGGTTCTTCTGCTCAGCAAAA
LOC_Os03g01960
Os.6668.1.S1_at--784--7011Chr03:578149..578173 (25 bp)
GTACTAGCTAGTTTTTCTACTCATG
LOC_Os03g01960
Os.6668.1.S1_at--805--3751Chr03:578168..578192 (25 bp)
CTCATGTTTTGTGCAGTTGTGGTCA
LOC_Os03g01960
Os.6668.1.S1_at--668--10171Chr03:578233..578257 (25 bp)
TTTTGGTAGGCCATCCATTTTGGAT
LOC_Os03g01960
Os.6668.1.S1_at--47--6171Chr03:578259..578283 (25 bp)
GAGGATCACGATATAGGCCATTCTG
LOC_Os03g01960
Os.6668.1.S1_at--952--8431Chr03:578274..578298 (25 bp)
GGCCATTCTGGAGCAAACTGATTAT
LOC_Os03g01960
Target Sequence 
AGAAGGCCGGATACGTCATCATCCACGACGCCGAACAGTACGTCGGCGGTAAGAACTAGGGGTGGGGAATTGGGCTATCT
CGCCGATGGCCAATTTAAGAATTTGTGATAAATGATCGCGTGGATTTGCGGGGTATATATACTACTATTAGCACCTATAT
ATGTGTTGCGTCTGTCTGACTCAGTATGTGTGTGTGATTTCGAAAAGAAACAAATTATGAATACGGTCTTGATGTTTTCT
TACATAATTTAAAGTGAAACTGAAGTGTCCTTATTTATTGATCATGAAACATGGAACATATTTGGTTCTTCTGCTCAGCA
AAATTGCAATATGTTGTGTACAACTTCTGGTAAATTATGGAGTACTAGCTAGTTTTTCTACTCATGTTTTGTGCAGTTGT
GGTCAGTGAATGTGTAGAATTTTCTACCATGAAAGGGCTAATATATTTTGGTAGGCCATCCATTTTGGATGGAGGATCAC
GATATAGGCCATTCTGGAGCAAACTGATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis