Browse Element(s) Details


Os.7327.4.S1_at

Description gb:AK065011.1
DB_XREF= gi:32975029
TID=Os.7327.4
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001F03, full insert sequence.
FL= gb:AK071535.1 gb:AK065011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0194011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01890Os.22665.1.S2_at11/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890Os.22665.1.S1_at9/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890OsAffx.29480.3.S1_at1/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01900OsAffx.12705.1.S1_at11/113+537574..53820140S ribosomal protein S17, putative, expressed
LOC_Os03g01910Os.12834.1.S1_a_at10/113+538710..541030Transcription factor BTF3, putative, expressed
LOC_Os03g01920Os.15287.1.S1_at11/113+546322..549191expressed protein
LOC_Os03g01920Os.52840.1.S1_at11/113+546322..549191expressed protein
LOC_Os03g01930Os.52274.1.S1_at8/113+549787..552201retrotransposon protein, putative, unclassified
LOC_Os03g01940Os.7327.4.S1_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.1.S2_a_at11/113+552563..558928expressed protein
LOC_Os03g01940Os.7327.2.S1_x_at11/113+552563..558928expressed protein
LOC_Os03g01950OsAffx.25962.1.S1_at11/113+570644..576389transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g01960Os.6668.1.S1_at11/113+577265..578305expressed protein
LOC_Os03g01970Os.7734.2.S1_x_at11/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01970Os.7734.1.S1_at11/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01970Os.54579.1.S1_at1/113+580852..587675THO complex subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7327.4.S1_at--258--8531Chr03:553458..553482 (25 bp)
TGGACAGGCACACTCGATTGCGACT
LOC_Os03g01940
Os.7327.4.S1_at--1018--5651Chr03:553456..553480 (25 bp)
GACAGGCACACTCGATTGCGACTTC
LOC_Os03g01940
Os.7327.4.S1_at--1088--1991Chr03:553447..553471 (25 bp)
ACTCGATTGCGACTTCCTCGAACGT
LOC_Os03g01940
Os.7327.4.S1_at--462--6591Chr03:553443..553467 (25 bp)
GATTGCGACTTCCTCGAACGTTCGT
LOC_Os03g01940
Os.7327.4.S1_at--1001--5671Chr03:553437..553461 (25 bp)
GACTTCCTCGAACGTTCGTCATGTA
LOC_Os03g01940
Os.7327.4.S1_at--934--3631Chr03:553435..553459 (25 bp)
CTTCCTCGAACGTTCGTCATGTAAA
LOC_Os03g01940
Os.7327.4.S1_at--670--4071Chr03:553429..553453 (25 bp)
CGAACGTTCGTCATGTAAAATCACA
LOC_Os03g01940
Os.7327.4.S1_at--703--10172Chr05:8349559..8349624 (24 bp)
TATTTACCTGAACAACCTTTGTTTG
NONE
Os.7327.4.S1_at--438--5511Chr03:552581..552605 (25 bp)
GAACAACCTTTGTTTGTAGGCAACA
LOC_Os03g01940
Os.7327.4.S1_at--928--2611Chr03:552577..552601 (25 bp)
AACCTTTGTTTGTAGGCAACAATCA
LOC_Os03g01940
Os.7327.4.S1_at--658--8651Chr03:552567..552591 (25 bp)
TGTAGGCAACAATCAGAAAAATTCC
LOC_Os03g01940
Target Sequence 
TGGACAGGCACACTCGATTGCGACTTCCTCGAACGTTCGTCATGTAAAATCACAAAGGCTGGGATTGGAGGCCCTGTTGT
TACTCTTGATGGGGATTGTATTGGTATGAACTTCTATGATACGAGAATAGGAACCCCTTTCCTGTCGTGGGAGGTGATTG
TTGATATTGTAGCATCCTTTGAGGAAAAAAGGTGGCCAGTGCCTATGCCATATTGATGCCACCCGGACTGTGTGTAGGAT
GAGTCTGAAGATGATGAAGAGTTGGGGTTTTCATCCACATTTGGCTGCAAGCTGAAGTACAATTACATAAATGGAGAGAA
AAGCGTGTTCTTTTAGTTGCTGTTAGATGTAGAAGAAACCTAACCTGAACTTGTTGTCAATCTCACTATATCCTAAAGCC
TGAACTTTTATATAGGAAAAACAAGTGAAGCCAGAACTTGTTGTCAATCTCACTATATCCTAAAGCCTGAACTTTTATGT
AGGAAAAAAAAAAGTTAAGCCAGAACTTGTTGTCAATCTCACTATTTACCTGAACAACCTTTGTTTGTAGGCAACAATCA
GAAAAATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7327.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis