Browse Element(s) Details


Os.11789.1.S1_at

Description gb:AK099538.1
DB_XREF= gi:32984747
TID=Os.11789.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013032C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013032C19, full insert sequence.
FL= gb:AK099538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0188011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01850Os.11723.4.S1_x_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.1.S1_s_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.2.S1_s_at8/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01860OsAffx.3109.1.S1_at11/113+497147..498140hypothetical protein
LOC_Os03g01870Os.34712.1.S1_at11/113+502353..503623NAC-domain containing protein 21/22, putative, expressed
LOC_Os03g01880Os.11789.1.S1_at11/113+515957..521115expressed protein
LOC_Os03g01880OsAffx.12704.1.S1_at11/113+515957..521115expressed protein
LOC_Os03g01890Os.22665.1.S2_at11/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890Os.22665.1.S1_at9/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01890OsAffx.29480.3.S1_at1/113+528278..536231rolled leaf1, putative, expressed
LOC_Os03g01900OsAffx.12705.1.S1_at11/113+537574..53820140S ribosomal protein S17, putative, expressed
LOC_Os03g01910Os.12834.1.S1_a_at10/113+538710..541030Transcription factor BTF3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11789.1.S1_at--23--8871Chr03:520539..520561 (23 bp)
TGAGGAATACGTCCCTTACCATGAT
LOC_Os03g01880
Os.11789.1.S1_at--484--1731Chr03:520554..520578 (25 bp)
ACCATGATAGGGTTGCGTCTGGGCT
LOC_Os03g01880
Os.11789.1.S1_at--977--8311Chr03:520575..520599 (25 bp)
GGCTGAACTGGGAGACTGGTCATCT
LOC_Os03g01880
Os.11789.1.S1_at--42--451Chr03:520596..520620 (25 bp)
ATCTAGGGTTCTAAGCTGTTGCAGC
LOC_Os03g01880
Os.11789.1.S1_at--352--5571Chr03:520649..520673 (25 bp)
GAAAGGCGAACCATCGAGCAGCCAT
LOC_Os03g01880
Os.11789.1.S1_at--840--5931Chr03:520664..520688 (25 bp)
GAGCAGCCATCAACATTAAGCATTG
LOC_Os03g01880
Os.11789.1.S1_at--910--6931Chr03:520718..520742 (25 bp)
GTAGTAGCAGCTTGTTAACCAGTCT
LOC_Os03g01880
Os.11789.1.S1_at--136--1211Chr03:520777..520801 (25 bp)
AGTTTGTCATCTCAGTTTGGGTAAG
LOC_Os03g01880
Os.11789.1.S1_at--994--6951Chr03:520810..520834 (25 bp)
GTAGCACCTAATCAGCCATATATCG
LOC_Os03g01880
Os.11789.1.S1_at--418--6411Chr03:520896..520920 (25 bp)
GATCTGGTTACTGCATCATAAGTTT
LOC_Os03g01880
Os.11789.1.S1_at--958--8731Chr03:520967..520991 (25 bp)
TGTAAGCCGTTTCTATTTCCATTTC
LOC_Os03g01880
Target Sequence 
TGAGGAATACGTCCCTTACCATGATAGGGTTGCGTCTGGGCTGAACTGGGAGACTGGTCATCTAGGGTTCTAAGCTGTTG
CAGCGAGCTTAATTAAGCTTAAATGAATTGAAGAAAGGCGAACCATCGAGCAGCCATCAACATTAAGCATTGCTTGTTNA
TTGTGCTCGATCTATGTAGTAGTAGTAGCAGCTTGTTAACCAGTCTAGATTGTCTTTTTTTTTTCTCCTACGAAGCATGG
AGTTTGTCATCTCAGTTTGGGTAAGAAAAACTAGTAGCACCTAATCAGCCATATATCGATGTTCAAGATCCAGTAACTGA
GAATTAATTGACACTAAACCAAGTGTCAAAGATTGACCNGATCTGGTTACTGCATCATAAGTTTTAAGATTGTTGCAAGT
TGTTGATTGAAACACTCTTTGTTTTGGAGATGTAAGCCGTTTCTATTTCCATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis