Browse Element(s) Details


OsAffx.3109.1.S1_at

Description tigr:9631.m00089
TID=OsAffx.3109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0186011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01800Os.18421.1.S1_a_at11/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800Os.46631.1.S1_x_at1/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810Os.47563.1.A1_at11/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01810Os.30537.2.S1_at6/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01820Os.30537.1.S1_at11/113+478264..480200Sterol desaturase family protein, expressed
LOC_Os03g01830Os.26376.2.S1_at10/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830Os.43898.1.S1_x_at9/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01840Os.26376.1.S1_at11/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01840OsAffx.24307.1.S1_at10/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01850Os.11723.4.S1_x_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.1.S1_s_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.2.S1_s_at8/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01860OsAffx.3109.1.S1_at11/113+497147..498140hypothetical protein
LOC_Os03g01870Os.34712.1.S1_at11/113+502353..503623NAC-domain containing protein 21/22, putative, expressed
LOC_Os03g01880Os.11789.1.S1_at11/113+515957..521115expressed protein
LOC_Os03g01880OsAffx.12704.1.S1_at11/113+515957..521115expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3109.1.S1_at--1065--5992Chr07:16322716..16322742 (25 bp)
GAGACCTCGTTCATTATGTTGTTGA
NONE
OsAffx.3109.1.S1_at--1113--3571Chr03:497542..497566 (25 bp)
CATTATGTTGTTGAAGCTGCTTACC
LOC_Os03g01860
OsAffx.3109.1.S1_at--374--5411Chr03:497554..497975 (25 bp)
GAAGCTGCTTACCTTTGACAGATTG
LOC_Os03g01860
OsAffx.3109.1.S1_at--176--3671Chr03:497967..497987 (21 bp)
CTTTGACAGATTGAGGGCCGCTGGT
LOC_Os03g01860
OsAffx.3109.1.S1_at--976--3231Chr03:497996..498020 (25 bp)
CAAGCCCTCAAGTCTCAGCAACGGT
LOC_Os03g01860
OsAffx.3109.1.S1_at--578--9731Chr03:498003..498027 (25 bp)
TCAAGTCTCAGCAACGGTCGTAGTA
LOC_Os03g01860
OsAffx.3109.1.S1_at--571--5151Chr03:498013..498037 (25 bp)
GCAACGGTCGTAGTAAGCATACAGT
LOC_Os03g01860
OsAffx.3109.1.S1_at--81--4971Chr03:498029..498053 (25 bp)
GCATACAGTTGAGAACTTTGTCAGT
LOC_Os03g01860
OsAffx.3109.1.S1_at--1055--10791Chr03:498046..498070 (25 bp)
TTGTCAGTTATAGTAGCACCGTGGC
LOC_Os03g01860
OsAffx.3109.1.S1_at--864--6951Chr03:498058..498082 (25 bp)
GTAGCACCGTGGCAGAAGCAAAAAC
LOC_Os03g01860
OsAffx.3109.1.S1_at--592--8151Chr03:498086..498110 (25 bp)
GGAAACACATGCTCAAGCATCACCA
LOC_Os03g01860
Target Sequence 
GAGACCTCGTTCATTATGTTGTTGAAGCTGCTTACCTTTGACAGATTGAGGGCCGCTGGTGTTGCTTTCAAGCCCTCAAG
TCTCAGCAACGGTCGTAGTAAGCATACAGTTGAGAACTTTGTCAGTTATAGTAGCACCGTGGCAGAAGCAAAAACCATGG
AAACACATGCTCAAGCATCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis