Browse Element(s) Details

Os.47563.1.A1_at

Description

gb:BX900155
DB_XREF= gi:40492205
DB_XREF=BX900155
CLONE=y668b03p3
TID=Os.47563.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47563 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197686.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g01810	11/11	SNF7 family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g01750	Os.8372.1.S1_at	11/11	3	+	449799..455084	protein tyrosine phosphatase, putative, expressed
LOC_Os03g01760	Os.14607.1.S1_at	11/11	3	+	457622..460344	exostosin family protein, putative, expressed
LOC_Os03g01760	Os.14607.1.S1_x_at	11/11	3	+	457622..460344	exostosin family protein, putative, expressed
LOC_Os03g01760	Os.14607.2.S1_x_at	5/11	3	+	457622..460344	exostosin family protein, putative, expressed
LOC_Os03g01770	Os.24310.1.A1_a_at	11/11	3	+	461280..463088	rhodanese, putative, expressed
LOC_Os03g01780	OsAffx.22272.1.S1_at	11/11	3	+	463616..464817	transposon protein, putative, unclassified
LOC_Os03g01790	OsAffx.24937.1.S1_at	11/11	3	+	466834..470785	Zinc finger, C3HC4 type family protein
LOC_Os03g01800	Os.18421.1.S1_a_at	11/11	3	+	470997..472438	Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800	Os.46631.1.S1_x_at	1/11	3	+	470997..472438	Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810	Os.47563.1.A1_at	11/11	3	+	476111..477906	SNF7 family protein, expressed
LOC_Os03g01810	Os.30537.2.S1_at	6/11	3	+	476111..477906	SNF7 family protein, expressed
LOC_Os03g01820	Os.30537.1.S1_at	11/11	3	+	478264..480200	Sterol desaturase family protein, expressed
LOC_Os03g01830	Os.26376.2.S1_at	10/11	3	+	484267..487525	DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830	Os.43898.1.S1_x_at	9/11	3	+	484267..487525	DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01840	Os.26376.1.S1_at	11/11	3	+	487103..488659	transposon protein, putative, unclassified, expressed
LOC_Os03g01840	OsAffx.24307.1.S1_at	10/11	3	+	487103..488659	transposon protein, putative, unclassified, expressed
LOC_Os03g01850	Os.11723.4.S1_x_at	11/11	3	+	489816..493129	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850	Os.11723.1.S1_s_at	11/11	3	+	489816..493129	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850	Os.11723.2.S1_s_at	8/11	3	+	489816..493129	Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01860	OsAffx.3109.1.S1_at	11/11	3	+	497147..498140	hypothetical protein
LOC_Os03g01870	Os.34712.1.S1_at	11/11	3	+	502353..503623	NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47563.1.A1_at--970--801	1	Chr03:477383..477407 (25 bp)	GGAGGTTGACAAGGTCCTCTCTGCA	LOC_Os03g01810
Os.47563.1.A1_at--1148--557	1	Chr03:477687..477711 (25 bp)	GAAAGGCTCGCCAAAGTGAGGTCAT	LOC_Os03g01810
Os.47563.1.A1_at--1077--831	1	Chr03:477691..477715 (25 bp)	GGCTCGCCAAAGTGAGGTCATAAAA	LOC_Os03g01810
Os.47563.1.A1_at--588--631	1	Chr03:477723..477747 (25 bp)	GATGAAAAGCAATCACTGGTTTGTT	LOC_Os03g01810
Os.47563.1.A1_at--1077--233	1	Chr03:477728..477752 (25 bp)	AAAGCAATCACTGGTTTGTTTTACT	LOC_Os03g01810
Os.47563.1.A1_at--506--681	1	Chr03:477745..477769 (25 bp)	GTTTTACTGTATTATACTCCACTTC	LOC_Os03g01810
Os.47563.1.A1_at--473--877	1	Chr03:477752..477776 (25 bp)	TGTATTATACTCCACTTCAGAATGT	LOC_Os03g01810
Os.47563.1.A1_at--159--437	1	Chr03:477763..477787 (25 bp)	CCACTTCAGAATGTATGTGTGTCAT	LOC_Os03g01810
Os.47563.1.A1_at--955--1009	1	Chr03:477776..477800 (25 bp)	TATGTGTGTCATATCAGAAATAGAA	LOC_Os03g01810
Os.47563.1.A1_at--936--255	1	Chr03:477821..477845 (25 bp)	AACTGATATACCTGCAACCTGCATT	LOC_Os03g01810
Os.47563.1.A1_at--892--1017	1	Chr03:477827..477851 (25 bp)	TATACCTGCAACCTGCATTCACTGA	LOC_Os03g01810

Target Sequence

GGAGGTTGACAAGGTCCTCTCTGCAATTGCTGGGGAGACTGCCTCTGAGCTTCCAGACGCTGTCAGGAAGGAAAAGGAGA
AGATGAAGCAACCTTCAACAAGTGAACCTGCAGAGAGAACTGCTATTGCGGAAGCCGTNCGATGACGATGACGAGCTTGA
ACAGATAAGGGAAAGGCTCGCCAAAGTGAGGTCATAAAAGAGTAATGATGAAAAGCAATCACTGGTTTGTTTTACTGTAT
TATACTCCACTTCAGAATGTATGTGTGTCATATCAGAAATAGAAACCCCNTGTTGTTATTAACNAACTGATATACCTGCA
ACCTGCATTCACTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis