Browse Element(s) Details


Os.14607.2.S1_x_at

Description gb:BI806646
DB_XREF= gi:15853850
DB_XREF=S070F07
CLONE=S070F07
TID=Os.14607.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1384D03.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g017605/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01720OsAffx.12703.1.S1_at11/113+430744..437650hypothetical protein
LOC_Os03g01730Os.27807.2.S1_a_at11/113+443523..446205expressed protein
LOC_Os03g01740Os.27807.1.S1_a_at11/113+448680..449420expressed protein
LOC_Os03g01740Os.27807.1.S1_at11/113+448680..449420expressed protein
LOC_Os03g01750Os.8372.1.S1_at11/113+449799..455084protein tyrosine phosphatase, putative, expressed
LOC_Os03g01760Os.14607.1.S1_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.1.S1_x_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.2.S1_x_at5/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01770Os.24310.1.A1_a_at11/113+461280..463088rhodanese, putative, expressed
LOC_Os03g01780OsAffx.22272.1.S1_at11/113+463616..464817transposon protein, putative, unclassified
LOC_Os03g01790OsAffx.24937.1.S1_at11/113+466834..470785Zinc finger, C3HC4 type family protein
LOC_Os03g01800Os.18421.1.S1_a_at11/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800Os.46631.1.S1_x_at1/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810Os.47563.1.A1_at11/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01810Os.30537.2.S1_at6/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01820Os.30537.1.S1_at11/113+478264..480200Sterol desaturase family protein, expressed
LOC_Os03g01830Os.26376.2.S1_at10/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830Os.43898.1.S1_x_at9/113+484267..487525DEAD/DEAH box helicase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14607.2.S1_x_at--450--4931Chr03:459804..459828 (25 bp)
GCTTGAGATTTTGCTAGACCGTTCT
LOC_Os03g01760
Os.14607.2.S1_x_at--1051--6411NONE
GATCTTTCCCGTACTTGCTGAAATG
NONE
Os.14607.2.S1_x_at--902--2971Chr03:459899..459923 (25 bp)
AATGTGGCATGTGATCAGTCGCAGC
LOC_Os03g01760
Os.14607.2.S1_x_at--43--7371Chr03:459925..459950 (25 bp)
GTGACACAATGACGTGCAGCTTGCA
LOC_Os03g01760
Os.14607.2.S1_x_at--639--10771Chr03:459983..460007 (25 bp)
TTGATCGACACCATCCATAGCAAGG
LOC_Os03g01760
Os.14607.2.S1_x_at--1099--10011Chr03:460000..460024 (25 bp)
TAGCAAGGACCTTCTCCATGAGAAA
LOC_Os03g01760
Os.14607.2.S1_x_at--848--1471NONE
AGAATGCCCGTTTCTCACATTCAAT
NONE
Os.14607.2.S1_x_at--236--10551NONE
TTCTAGGCTAACCAGTTGGCGAGCT
NONE
Os.14607.2.S1_x_at--414--8471NONE
TGGCGAGCTCTGTGCACGGGAATTA
NONE
Os.14607.2.S1_x_at--1014--2871NONE
AAGGTCTTCGGATATGTTTCATGTT
NONE
Os.14607.2.S1_x_at--734--6631NONE
GTTGTACTATTGTATACCCCATTCT
NONE
Target Sequence 
GCTTGAGATTTTGCTAGACCGTTCTCNAAGGAGNCATGTTGAATCATGGAAGAGNNNAGACCACAGAGGGGAGGGATCTT
TCCCGTACTTGCTGAAATGTGGCATGTGATCAGTCGCAGCGNGTGACACAATGACGTGCAGCTTGCACATGCCACTCAAC
TGACCAAACCAATCATATTTGATCGACACCATCCATAGCAAGGACCTTCTCCATGAGAAATTCAGAATGCCCGTTTCTCA
CATTCAATCATATTCTTGAATGGTGAACTGTGTAGTTGGCCATTGACTAAGTAATTTGAATGTNCCATCAGAGAAGCGCA
NTTCTAGGCTAACCAGTTGGCGAGCTCTGTGCACGGGAATTAGTTTATTCTTTATTATTGGGAGAAATGTGAATCTCCTT
TTNCTTTTCTTGAGAGAGAGAGAGATTAAAATTGTGTTATAGAACGATGATCTGTGAAGGTCTTCGGATATGTTTCATGT
TGTACTATTGTATACCCCATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14607.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis