Browse Element(s) Details


Os.17650.1.S1_at

Description gb:AK063431.1
DB_XREF= gi:32973449
TID=Os.17650.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative kinesin-related protein (OJ1384D03.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D10, full insert sequence.
FL= gb:AK063431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0171011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01670Os.28346.5.S1_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_x_at11/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.5.S1_x_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01670Os.28346.4.S1_at10/113+391689..394364E1-E2 ATPase family protein
LOC_Os03g01684Os.28346.5.S1_at11/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.5.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.2.S1_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.3.S1_x_at10/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.4.S1_x_at9/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_x_at6/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.28346.1.S1_at2/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01684Os.49292.2.S1_x_at1/113+395061..406955retrotransposon protein, putative, unclassified
LOC_Os03g01700Os.18734.1.S1_at10/113+408839..411219transmembrane protein, putative, expressed
LOC_Os03g01710Os.17650.1.S1_at11/113+418686..425932expressed protein
LOC_Os03g01710Os.17650.1.S2_at11/113+418686..425932expressed protein
LOC_Os03g01720OsAffx.12703.1.S1_at11/113+430744..437650hypothetical protein
LOC_Os03g01730Os.27807.2.S1_a_at11/113+443523..446205expressed protein
LOC_Os03g01740Os.27807.1.S1_a_at11/113+448680..449420expressed protein
LOC_Os03g01740Os.27807.1.S1_at11/113+448680..449420expressed protein
LOC_Os03g01750Os.8372.1.S1_at11/113+449799..455084protein tyrosine phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17650.1.S1_at--299--6671Chr03:422793..422817 (25 bp)
GTTGCAAAGCTGACCTAGAGCTACA
LOC_Os03g01710
Os.17650.1.S1_at--627--5911Chr03:422810..422834 (25 bp)
GAGCTACATATATCGGACCTGGAAC
LOC_Os03g01710
Os.17650.1.S1_at--268--2511Chr03:422840..422864 (25 bp)
AACATAGAGCTATCGGAACGCATTT
LOC_Os03g01710
Os.17650.1.S1_at--356--5451Chr03:422855..422879 (25 bp)
GAACGCATTTCTGGACTCGAAGCTC
LOC_Os03g01710
Os.17650.1.S1_at--560--4611Chr03:422913..422937 (25 bp)
GCGAGCTGCAGATACATGATTCTAA
LOC_Os03g01710
Os.17650.1.S1_at--1030--2251Chr03:422936..422960 (25 bp)
AAATCACTTATCGTCAATCTCAAAG
LOC_Os03g01710
Os.17650.1.S1_at--795--9011Chr03:423093..423117 (25 bp)
TGCAATCCACAGTTGAGAGCCTTAT
LOC_Os03g01710
Os.17650.1.S1_at--1144--2231Chr03:423167..423191 (25 bp)
AAATTGGAGTTGCATGGCCACCTCA
LOC_Os03g01710
Os.17650.1.S1_at--1126--2411Chr03:423245..423269 (25 bp)
AAAACAGTCGAATTCCTAGAGGCAA
LOC_Os03g01710
Os.17650.1.S1_at--847--2771Chr03:423303..423327 (25 bp)
AAGAGCAGTCTTTACTATCAGAACT
LOC_Os03g01710
Os.17650.1.S1_at--1114--6011Chr03:423329..423353 (25 bp)
GAGAGTATATTCCAGGAGCACACGG
LOC_Os03g01710
Target Sequence 
GTTGCAAAGCTGACCTAGAGCTACATATATCGGACCTGGAACAGGAAAACATAGAGCTATCGGAACGCATTTCTGGACTC
GAAGCTCANTTGACATACATGACAAATGAAAAGGAGTCAAGCGAGCTGCAGATACATGATTCTAAATCACTTATCGTCAA
TCTCAAAGATAAAGTAGAGCGCCAGCAAGCAGAGATGGAAACTCAAAGGCTTGAGTTTAAGCAAAAACAACAGGAAGCTC
ANANAAAATTGTCTGAAGCACAAGATGATTCNGAGGTTCTGAGGAGATCTAATTCTAAACTGCAATCCACAGTTGAGAGC
CTTATTGAAGAGTGCAGTTCTCTGCAGAATCAAATTGCAGAGCTGAAGAGGCAGAAATTGGAGTTGCATGGCCACCTCAC
TCAGCAAGAGCAGGAATTGGATAACTCAAAAAAACGAAACCTTGATTTTTGCAAAACAGTCGAATTCCTAGAGGCAAAGC
TTTCTTCACTTCAGAAAGACATTTCTTCCAAAGAGCAGTCTTTACTATCAGAACTGGAGAGTATATTCCAGGAGCACACG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis