Browse Element(s) Details


Os.24249.1.A1_at

Description gb:AK063882.1
DB_XREF= gi:32973900
TID=Os.24249.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24249 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033066M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-F09, full insert sequence.
FL= gb:AK063882.1 gb:AK073789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4169011/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41670Os.54687.1.S1_at11/1112+25757103..25762761expressed protein
LOC_Os12g41680Os.53228.1.S1_at11/1112+25767338..25772900salicylic acid-induced protein 19, putative, expressed
LOC_Os12g41690Os.24249.1.A1_at11/1112+25774023..25779025plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g41700Os.24046.1.S1_at10/1112+25781671..25785255zinc finger protein, putative, expressed
LOC_Os12g41710Os.5238.1.S1_at11/1112+25787234..25791093receptor-like serine/threonine kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24249.1.A1_at--299--2011Chr12:25774579..25774603 (25 bp)
ACTCGTGTCATCGTTCATCGGTGTC
LOC_Os12g41690
Os.24249.1.A1_at--1022--611Chr12:25774548..25774572 (25 bp)
ATGCTGGCCCTGAATCTACTGTCAG
LOC_Os12g41690
Os.24249.1.A1_at--301--7371Chr12:25774497..25774521 (25 bp)
GTGACCGGCCAATGAGTTGTCCATA
LOC_Os12g41690
Os.24249.1.A1_at--539--251Chr12:25774475..25774499 (25 bp)
ATATCTCTCAGGACAGCTCATTCAT
LOC_Os12g41690
Os.24249.1.A1_at--474--3011Chr12:25774438..25774462 (25 bp)
AATGCACTGTTTCTGTCTTTGGATT
LOC_Os12g41690
Os.24249.1.A1_at--261--7071Chr12:25774388..25774412 (25 bp)
GTAAGTCTATTATCTGCTCCATGTG
LOC_Os12g41690
Os.24249.1.A1_at--802--2211Chr12:25774352..25774376 (25 bp)
ACAACCTTCAGTGAGCCAGTGTGCT
LOC_Os12g41690
Os.24249.1.A1_at--899--6691Chr12:25774310..25774334 (25 bp)
GTTCCATCTTGCTTGGCCTGAAATG
LOC_Os12g41690
Os.24249.1.A1_at--757--9751Chr12:25774172..25774196 (25 bp)
TAATAGTCCTGCCAATTTGTCCTCT
LOC_Os12g41690
Os.24249.1.A1_at--388--8631Chr12:25774082..25774106 (25 bp)
TGGGCTTTCCAGACAATTAGTACCT
LOC_Os12g41690
Os.24249.1.A1_at--208--6991Chr12:25774063..25774087 (25 bp)
GTACCTGTTGTACTGCATTGAGCTT
LOC_Os12g41690
Target Sequence 
ACTCGTGTCATCGTTCATCGGTGTCGCGCTCATGCTGGCCCTGAATCTACTGTCAGCAGCAGCCAACTCACCCCGCTCTA
ATGTGACCGGCCAATGAGTTGTCCATATCTCTCAGGACAGCTCATTCATGACAAAATTAACAATGCACTGTTTCTGTCTT
TGGATTGTACTCAGGTTAGGGCAGAAGAACTGTAAGTCTATTATCTGCTCCATGTGGGAGCTGGATCACAACCTTCAGTG
AGCCAGTGTGCTAAATTTGGCATGCAACTGTTCCATCTTGCTTGGCCTGAAATGAGCAGGCCAAGAGTACAAACACATAA
ACTCCAATTGGTTATGGGGCTTTAGCTAGATCAAGTTGTTACACTATTAAATTCTACTACTTTGTGGGTGTAAATTTTAT
CTTGTACTAATAGTCCTGCCAATTTGTCCTCTTTTTTTTTTTTTTTTGCTTAGGTGGATGCAACTTTTCATTATTTAACA
GGCTTGTCTGGTGANCCATGGGCTTTCCAGACAATTAGTACCTGTTGTACTGCATTGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24249.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis