Browse Element(s) Details


Os.54687.1.S1_at

Description gb:AK106471.1
DB_XREF= gi:32991680
TID=Os.54687.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A06, full insert sequence.
FL= gb:AK106471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4167011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41650Os.11675.1.A1_at11/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41650OsAffx.13917.1.S1_x_at1/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41650OsAffx.29544.1.S1_x_at1/1112+25735202..25739518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g41660NANA12+25747579..25748688hypothetical protein
LOC_Os12g41670Os.54687.1.S1_at11/1112+25757103..25762761expressed protein
LOC_Os12g41680Os.53228.1.S1_at11/1112+25767338..25772900salicylic acid-induced protein 19, putative, expressed
LOC_Os12g41690Os.24249.1.A1_at11/1112+25774023..25779025plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g41700Os.24046.1.S1_at10/1112+25781671..25785255zinc finger protein, putative, expressed
LOC_Os12g41710Os.5238.1.S1_at11/1112+25787234..25791093receptor-like serine/threonine kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54687.1.S1_at--449--4931Chr12:25761806..25761830 (25 bp)
GCTTGGAAGTTGTCTGCAAATCCTT
LOC_Os12g41670
Os.54687.1.S1_at--214--6251Chr12:25762235..25762259 (25 bp)
GATGGAGTTCTCAGTTTCCAACACT
LOC_Os12g41670
Os.54687.1.S1_at--529--6851Chr12:25762248..25762272 (25 bp)
GTTTCCAACACTGCAGAAGTCCTTG
LOC_Os12g41670
Os.54687.1.S1_at--1045--2831Chr12:25762264..25762288 (25 bp)
AAGTCCTTGCAAATCCATATACGGG
LOC_Os12g41670
Os.54687.1.S1_at--652--2811Chr12:25762296..25762320 (25 bp)
AAGATTTTGCCCTCGAACAGTGTGC
LOC_Os12g41670
Os.54687.1.S1_at--996--5491Chr12:25762310..25762334 (25 bp)
GAACAGTGTGCCTTTATCCAATAAA
LOC_Os12g41670
Os.54687.1.S1_at--1153--9951Chr12:25762350..25762374 (25 bp)
TAGAACGGTTCCAAGGCCATCCGGT
LOC_Os12g41670
Os.54687.1.S1_at--564--4931Chr12:25762383..25762407 (25 bp)
GCTTGTCTCTCTGAAGTGATATCAT
LOC_Os12g41670
Os.54687.1.S1_at--689--1871Chr12:25762496..25762520 (25 bp)
ACGAGTCACCTTTTGTCTACAGATA
LOC_Os12g41670
Os.54687.1.S1_at--124--6052Chr12:25762629..25762653 (25 bp)
GAGATCTTATTTCTTGCCTATCCTT
LOC_Os12g41670
Os.54687.1.S1_at--1044--9571Chr12:25762640..25762664 (25 bp)
TCTTGCCTATCCTTATTCAATCGGT
LOC_Os12g41670
Target Sequence 
GCTTGGAAGTTGTCTGCAAATCCTTCAAAAGTGTGACATGGTAGGATGGAGTTCTCAGTTTCCAACACTGCAGAAGTCCT
TGCAAATCCATATACGGGAGAGTGGAAGATTTTGCCCTCGAACAGTGTGCCTTTATCCAATAAATGCTAAGTCAACATCT
AGAACGGTTCCAAGGCCATCCGGTGCATGGCTGCTTGTCTCTCTGAAGTGATATCATACAAGTTGCCACCAAACTTCACA
TTCCCTGCAGGCTGCNATATGTTTATGCAAGATCGACAAGCTATCACTAATCAAGGAAAAAGTTGACGAGTCACCTTTTG
TCTACAGATATACAACTCGCTGTTATTATTTATACTTCTTTGAAGTAGATTAATCTTTATATTATCCTAACTGGCTGGAA
AATATGTTCAGCAAAGCAACACGGATGAATTGTTTCATGAGATCTTATTTCTTGCCTATCCTTATTCAATCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis