Browse Element(s) Details


Os.5238.1.S1_at

Description gb:AK066826.1
DB_XREF= gi:32976844
TID=Os.5238.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075B11, full insert sequence.
FL= gb:AK066826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4171011/11receptor-like serine/threonine kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41670Os.54687.1.S1_at11/1112+25757103..25762761expressed protein
LOC_Os12g41680Os.53228.1.S1_at11/1112+25767338..25772900salicylic acid-induced protein 19, putative, expressed
LOC_Os12g41690Os.24249.1.A1_at11/1112+25774023..25779025plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os12g41700Os.24046.1.S1_at10/1112+25781671..25785255zinc finger protein, putative, expressed
LOC_Os12g41710Os.5238.1.S1_at11/1112+25787234..25791093receptor-like serine/threonine kinase, putative, expressed
LOC_Os12g41720OsAffx.32140.1.S1_x_at11/1112+25805168..25806864Patatin-like phospholipase family protein, expressed
LOC_Os12g41720OsAffx.32140.1.S1_at11/1112+25805168..25806864Patatin-like phospholipase family protein, expressed
LOC_Os12g41730Os.2741.4.S1_x_at10/1112+25812587..25818652retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5238.1.S1_at--593--5511Chr12:25787737..25787761 (25 bp)
GAAAATAGGTCTCCTGTGCACTCAA
LOC_Os12g41710
Os.5238.1.S1_at--950--9271Chr12:25787726..25787750 (25 bp)
TCCTGTGCACTCAAGATACTCCGAA
LOC_Os12g41710
Os.5238.1.S1_at--379--2811Chr12:25787714..25787738 (25 bp)
AAGATACTCCGAAGATCAGGCCCTC
LOC_Os12g41710
Os.5238.1.S1_at--691--1271Chr12:25787702..25787726 (25 bp)
AGATCAGGCCCTCCATGTCGACGAT
LOC_Os12g41710
Os.5238.1.S1_at--819--8711Chr12:25787687..25787711 (25 bp)
TGTCGACGATCGTCAAGATGCTCAA
LOC_Os12g41710
Os.5238.1.S1_at--808--9371Chr12:25787594..25787618 (25 bp)
TCAGAACAGTTGAGCCGGTTCAGTT
LOC_Os12g41710
Os.5238.1.S1_at--1118--4911Chr12:25787518..25787542 (25 bp)
GCTTGCAGTAGCTGGTAGCACTGTG
LOC_Os12g41710
Os.5238.1.S1_at--166--6871Chr12:25787292..25787316 (25 bp)
GTTTGTATACATAGCATCTGAGTTT
LOC_Os12g41710
Os.5238.1.S1_at--877--4971Chr12:25787279..25787303 (25 bp)
GCATCTGAGTTTTATTATCACCAGC
LOC_Os12g41710
Os.5238.1.S1_at--1050--10411Chr12:25787265..25787289 (25 bp)
TTATCACCAGCTATACAAACCCTTG
LOC_Os12g41710
Os.5238.1.S1_at--592--9811Chr12:25787252..25787276 (25 bp)
TACAAACCCTTGGTGTTTATACTAG
LOC_Os12g41710
Target Sequence 
GAAAATAGGTCTCCTGTGCACTCAAGATACTCCGAAGATCAGGCCCTCCATGTCGACGATCGTCAAGATGCTCAAGGGCG
AGTGCGCAATTGGCGATAAGATCATGAGGCCAGGCCTGATCACAGATGTCATGGACCTGAAAATCAGAACAGTTGAGCCG
GTTCAGTTCAGTGCCTCTCCACCCAAATCTCCTTCAGACAGCAACTCCCAGGTGTCCATGCTTGCAGTAGCTGGTAGCAC
TGTGGTAGAAGAGAGCCCCTGATGGAAGGTTGGATATCTGAAGGAAAAGATGATTTCAGGTTAGAAAGATATAAAAGAAG
AATGAAAAGATGCCTGAAAAGCNATGGTTGTAAATTGAAAGGGAGATGGAAAGAGCCNAAGAGGATCTTATACATTTTTT
TTTNNNNGTTTGTGTAGTTTTGCTAGGTAGATACTATTGTAGGAATGTTGTTTGTATACATAGCATCTGAGTTTTATTAT
CACCAGCTATACAAACCCTTGGTGTTTATACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis