Browse Element(s) Details


OsAffx.32140.1.S1_x_at

Description tigr:9640.m04090
TID=OsAffx.32140.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4172011/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41700Os.24046.1.S1_at10/1112+25781671..25785255zinc finger protein, putative, expressed
LOC_Os12g41710Os.5238.1.S1_at11/1112+25787234..25791093receptor-like serine/threonine kinase, putative, expressed
LOC_Os12g41720OsAffx.32140.1.S1_x_at11/1112+25805168..25806864Patatin-like phospholipase family protein, expressed
LOC_Os12g41720OsAffx.32140.1.S1_at11/1112+25805168..25806864Patatin-like phospholipase family protein, expressed
LOC_Os12g41730Os.2741.4.S1_x_at10/1112+25812587..25818652retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g41740NANA12+25828413..25829279hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32140.1.S1_x_at--454--1311Chr12:25805827..25805851 (25 bp)
AGATGGTCCGCCTCACCGCCGAGGG
LOC_Os12g41720
OsAffx.32140.1.S1_x_at--1055--2111Chr12:25805686..25805706 (21 bp)
ACATGGTCGACCAAGCGGTGGCCAT
LOC_Os12g41720
OsAffx.32140.1.S1_x_at--992--9351Chr12:25805680..25805704 (25 bp)
TCGACCAAGCGGTGGCCATGGCTTT
LOC_Os12g41720
OsAffx.32140.1.S1_x_at--790--8451Chr12:25805668..25805692 (25 bp)
TGGCCATGGCTTTCGGACACACGTG
LOC_Os12g41720
OsAffx.32140.1.S1_x_at--786--8131Chr12:25805654..25805678 (25 bp)
GGACACACGTGTGGGCGCAACTACG
LOC_Os12g41720
OsAffx.32140.1.S1_x_at--248--7471Chr12:25805646..25805670 (25 bp)
GTGTGGGCGCAACTACGTCCGCATC
LOC_Os12g41720
OsAffx.32140.1.S1_x_at--91--4011Chr12:25805505..25805529 (25 bp)
CGTGCAAGACGAAGGCGCTGAGCTC
LOC_Os12g41720
OsAffx.32140.1.S1_x_at--838--532Chr12:25805455..25805479 (25 bp)
ATCGCCGACGGGATGCTGACGCAGC
LOC_Os12g41720
OsAffx.32140.1.S1_x_at--1018--3931Chr12:25805401..25805425 (25 bp)
CGGCGGCTGTCGGAGAAGTCAAACC
LOC_Os12g41720
OsAffx.32140.1.S1_x_at--585--3271Chr12:25805382..25805406 (25 bp)
CAAACCGGGAGAAGCTGGACGCGTT
LOC_Os12g41720
OsAffx.32140.1.S1_x_at--694--1911Chr12:25805301..25805325 (25 bp)
ACGTGGTCATCAAGCAGGTGGCCGC
LOC_Os12g41720
Target Sequence 
AGATGGTCCGCCTCACCGCCGAGGGCGTCGCCGACATGGTCGACCAAGCGGTGGCCATGGCTTTCGGACACACGTGTGGG
CGCAACTACGTCCGCATCCAGGCGGCGTCGCCGGCGTGCAAGACGAAGGCGCTGAGCTCGGTGGACGCGAAGAAGGCGGC
GGCGATCGCCGACGGGATGCTGACGCAGCGGAACGTGGAGGCGGAGCTGTTCCGGGGGCGGCGGCTGTCGGAGAAGTCAA
ACCGGGAGAAGCTGGACGCGTTCGCGGCGGAGCTTGTGAAGGAGCACGAGCGGCGGCGGGCCTCGCCGGGGCTCCCCAAC
GTGGTCATCAAGCAGGTGGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32140.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis