Browse Element(s) Details


Os.24305.1.A1_at

Description gb:AK107933.1
DB_XREF= gi:32993142
TID=Os.24305.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A04, full insert sequence.
FL= gb:AK107933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g385509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38510OsAffx.14191.1.S1_at11/114+22664388..22664913hypothetical protein
LOC_Os04g38520Os.15136.1.A1_s_at11/114+22671226..22673671expressed protein
LOC_Os04g38520Os.13740.1.A1_at11/114+22671226..22673671expressed protein
LOC_Os04g38530Os.20067.1.S1_at11/114+22674694..22679574Aldose 1-epimerase family protein, expressed
LOC_Os04g38540Os.27545.1.S1_at11/114+22683509..22686551Aldose 1-epimerase family protein, expressed
LOC_Os04g38550Os.24305.1.A1_at9/114+22689474..22690986expressed protein
LOC_Os04g38560Os.18265.1.S1_at11/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560OsAffx.23254.1.S1_x_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560Os.54835.1.S1_s_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38570Os.48287.1.S1_at11/114+22695700..22702202multidrug resistance P-glycoprotein, putative, expressed
LOC_Os04g38580NANA4+22706530..22707312hypothetical protein
LOC_Os04g38590Os.55234.1.S1_s_at2/114+22710340..22710689hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24305.1.A1_at--907--6551Chr04:22690896..22690920 (25 bp)
GATTCAATCCAGAGGCAGGACTCCT
LOC_Os04g38550
Os.24305.1.A1_at--54--8131Chr04:22690879..22690903 (25 bp)
GGACTCCTTTGATGACTTGATTAAC
LOC_Os04g38550
Os.24305.1.A1_at--305--5531Chr04:22689928..22689952 (25 bp)
GAAACAACTCCCCTGAAGAGGCTTT
LOC_Os04g38550
Os.24305.1.A1_at--469--4891Chr04:22689911..22689932 (22 bp)
GCTTTCAGGATTTTCACCCAGGGTT
LOC_Os04g38550
Os.24305.1.A1_at--416--3891Chr04:22689723..22689747 (25 bp)
CTGTGGTGGGCAATGCTACTACTCC
LOC_Os04g38550
Os.24305.1.A1_at--755--9891Chr04:22689695..22689719 (25 bp)
TACTACCAATCAGGCCGTGACCGTG
LOC_Os04g38550
Os.24305.1.A1_at--223--7811Chr04:22689588..22689612 (25 bp)
GGTCGGGTCGAGAAGCCTACCTGCT
LOC_Os04g38550
Os.24305.1.A1_at--134--9971Chr04:22689533..22689558 (25 bp)
TACCCGCTCTGTGCCTGAGAATAAT
LOC_Os04g38550
Os.24305.1.A1_at--1151--3071NONE
AATAATCGTGTCTAGTGTGCTGAAC
NONE
Os.24305.1.A1_at--115--2171Chr04:22689491..22689515 (25 bp)
ACACCAGCCGTTTCCTTTAGAGAAG
LOC_Os04g38550
Os.24305.1.A1_at--730--2631NONE
AACCATGTTTGCTTGTTTTGGCCGC
NONE
Target Sequence 
GATTCAATCCAGAGGCAGGACTCCTTTGATGACTTGATTAACCTNGCCGACGATGTGGTTGTGGAGGCGCCTACTCTCTC
CAGCGAGGAGATGGACCGTGCAAGGAGGGAGGCTCTGGAGATACTGAGAAACAACTCCCCTGAAGAGGCTTTCAGGATTT
TCACCCAGGGTTTAATAGGGCAGGTGGTTCAGAGCCCTGTGGTGGGCAATGCTACTACTCCTCCTACTACCAATCAGGCC
GTGACCGTGAGCGTCCCTCCCAAGGCCGGCGACGGCGAGCCCAAGACCGCACCCCGTCCTCCGAACAACTGACCGAGATC
GACTCGCGGCCGGTCGGGTCGAGAAGCCTACCTGCTCCTGCGGTGCGTGCGCCGTCCAGCTCCTCTACCCGCTCTGTGCC
TGAGAATAATCGTGTCTAGTGTGCTGAACACCAGCCGTTTCCTTTAGAGAAGTTAAACCATGTTTGCTTGTTTTGGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24305.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis