Browse Element(s) Details


Os.20067.1.S1_at

Description gb:AK059553.1
DB_XREF= gi:32969571
TID=Os.20067.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G05, full insert sequence.
FL= gb:AK059553.1 gb:AK104444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3853011/11Aldose 1-epimerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38480Os.16934.1.S1_at10/114+22648195..22653439BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os04g38490OsAffx.26376.1.S1_at11/114+22659900..22660804hypothetical protein
LOC_Os04g38500OsAffx.4015.1.S1_at11/114+22661715..22662312hypothetical protein
LOC_Os04g38510OsAffx.14191.1.S1_at11/114+22664388..22664913hypothetical protein
LOC_Os04g38520Os.15136.1.A1_s_at11/114+22671226..22673671expressed protein
LOC_Os04g38520Os.13740.1.A1_at11/114+22671226..22673671expressed protein
LOC_Os04g38530Os.20067.1.S1_at11/114+22674694..22679574Aldose 1-epimerase family protein, expressed
LOC_Os04g38540Os.27545.1.S1_at11/114+22683509..22686551Aldose 1-epimerase family protein, expressed
LOC_Os04g38550Os.24305.1.A1_at9/114+22689474..22690986expressed protein
LOC_Os04g38560Os.18265.1.S1_at11/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560OsAffx.23254.1.S1_x_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560Os.54835.1.S1_s_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38570Os.48287.1.S1_at11/114+22695700..22702202multidrug resistance P-glycoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20067.1.S1_at--405--5911Chr04:22678986..22679010 (25 bp)
GAGCTCATCCCGACGGGCCAGGTCG
LOC_Os04g38530
Os.20067.1.S1_at--224--10551Chr04:22679373..22679397 (25 bp)
TTCCCGTCGGTGATCGTGAGGCCCG
LOC_Os04g38530
Os.20067.1.S1_at--319--8851Chr04:22679389..22679413 (25 bp)
TGAGGCCCGGACAGGTGTACAAGCA
LOC_Os04g38530
Os.20067.1.S1_at--912--6251Chr04:22679417..22679441 (25 bp)
GATGGTGTACAAGTTCTCGTTCTAG
LOC_Os04g38530
Os.20067.1.S1_at--392--3231Chr04:22679426..22679450 (25 bp)
CAAGTTCTCGTTCTAGTTTAGGTGA
LOC_Os04g38530
Os.20067.1.S1_at--176--6831Chr04:22679441..22679465 (25 bp)
GTTTAGGTGACTATACATGGATCAT
LOC_Os04g38530
Os.20067.1.S1_at--740--271Chr04:22679464..22679488 (25 bp)
ATATGTGGTCATTGGTCGATCGCTT
LOC_Os04g38530
Os.20067.1.S1_at--289--9391Chr04:22679479..22679503 (25 bp)
TCGATCGCTTCATCTGCTGTAAGTT
LOC_Os04g38530
Os.20067.1.S1_at--616--471Chr04:22679490..22679514 (25 bp)
ATCTGCTGTAAGTTGTGACATTGTC
LOC_Os04g38530
Os.20067.1.S1_at--424--8691Chr04:22679511..22679535 (25 bp)
TGTCGGTGTCGGTCGGTGCAATAAT
LOC_Os04g38530
Os.20067.1.S1_at--455--6651Chr04:22679545..22679569 (25 bp)
GTTGATTTGCAATAAGACGCATGGG
LOC_Os04g38530
Target Sequence 
GAGCTCATCCCGACGGGCCAGGTCGCGCCCGTCACCGGCACGCCCTACGACCTCCGCGCGCCGACGCCCGTGGGCGCGCG
CGTCCACCTGGTGACGGGCGGCCTCAGCAAGACGGGCNCCACCATCTACGGCTTCGACACCAACTACGCCNGTGGACGGC
GGTGACGACGTCGACGCGCACGCGCACGCGCTGCGGCGGGTGGCCGTCGTCCGGGACGGCAAGTCCGGGCGGTCGCTGGA
GCTGTGGGCGAACCAGCCCGGGGTGCAGTTCTACACCGGCAACTTCCTCACGGCCGACGTGAAGGGGAAGGGCGGGAAGG
CGTACGGGCAGTACGGCGCGCTGTGCCTGGAGACGCAGGGGTTCCCCGACGCCGTGAACCACCCCAACTTCCCGTCGGTG
ATCGTGAGGCCCGGACAGGTGTACAAGCACGAGATGGTGTACAAGTTCTCGTTCTAGTTTAGGTGACTATACATGGATCA
TATGTGGTCATTGGTCGATCGCTTCATCTGCTGTAAGTTGTGACATTGTCGGTGTCGGTCGGTGCAATAATATGATATGC
GTTGATTTGCAATAAGACGCATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis